WormBase Tree Display for Gene: WBGene00104617
expand all nodes | collapse all nodes | view schema
| WBGene00104617 | SMap | S_parent | Sequence | PPA_ChrIII | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-phf-5 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA15063 | ||||||||
| Molecular_name | PPA15063 | ||||||||
| PPA15063.1 | |||||||||
| PP58277 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000074759 | ||||||||
| UMM-S66-27.73 | Person_evidence | WBPerson606 | |||||||
| Ppa-gip-1 | From_analysis | Inferred_from_orthology | |||||||
| Public_name | Ppa-phf-5 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:05 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-phf-5 | ||||
| Other_name | Ppa-gip-1 | ||||||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-phf-5 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-phf-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | phf | ||||||||
| RNASeq_FPKM | WBls:0000032 | 6.50189 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.27973 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 2.59387 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00179958 | ||||||||
| Ortholog (28) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in mRNA splicing, via spliceosome. Is an ortholog of C. elegans phf-5. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA15063 | |||||||
| Corresponding_transcript | PPA15063.1 | ||||||||
| Other_sequence (64) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_5775 | |||||||
| GPL14372_Probes_5778 | |||||||||
| GPL14372_Probes_46916 | |||||||||
| Expression_cluster | WBPaper00041207:PP_dauer_up | ||||||||
| WBPaper00041466:PP_germline-ablation_regulated | |||||||||
| WBPaper00041606:PP_X.nematophila_regulated | |||||||||
| Remark | [190208 pad] The CGC name Ppa-phf-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-phf-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
