WormBase Tree Display for Gene: WBGene00099181
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| WBGene00099181 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-tni-4 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA09627 | ||||||||
| Molecular_name | PPA09627 | ||||||||
| PPA09627.1 | |||||||||
| PP60146 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000066161 | ||||||||
| GENEPREDICTION_SNAP300000076390 | |||||||||
| GENEPREDICTION_SNAP300000077199 | |||||||||
| UMM-S2857-8.39 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-tni-4 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00109109 | ||||
| 3 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00109943 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-tni-4 | ||||
| 5 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:24 | WBPerson1983 | Name_change | CGC_name | Ppa-tni-4 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-tni-4 | ||||
| Acquires_merge | WBGene00109109 | ||||||||
| WBGene00109943 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tni | ||||||||
| RNASeq_FPKM | WBls:0000032 | 5.42429 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 12.8152 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | ||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| 5.42429 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 6.07983 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| GO_annotation | 00177723 | ||||||||
| Ortholog (52) | |||||||||
| Paralog | WBGene00099182 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00109023 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00113105 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00272388 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00277836 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be part of troponin complex. Is an ortholog of C. elegans tni-4. In C. elegans, tni-4 is involved in embryo development and pharyngeal pumping. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA09627 | |||||||
| Corresponding_transcript | PPA09627.1 | ||||||||
| Other_sequence (27) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_76766 | |||||||
| GPL14372_Probes_76767 | |||||||||
| GPL14372_Probes_76769 | |||||||||
| Expression_cluster | WBPaper00064862:Ppa-sul-2(tu1069)_4M1_Down | ||||||||
| WBPaper00041207:PP_dauer_down | |||||||||
| Remark | [190208 pad] The CGC name Ppa-tni-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-tni-4 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
