WormBase Tree Display for Gene: WBGene00095394
expand all nodes | collapse all nodes | view schema
| WBGene00095394 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-clc-1.2 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA05840 | ||||||||
| Molecular_name | PPA05840 | ||||||||
| PPA05840.1 | |||||||||
| PP70124 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000063314 | ||||||||
| UMM-S2838-19.73 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-clc-1.2 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:04 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 20 Mar 2018 10:26:12 | WBPerson4025 | Name_change | CGC_name | Ppa-clc-1.2 | ||||
| 3 | 08 May 2019 10:09:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 01 Oct 2019 10:47:49 | WBPerson1983 | Name_change | CGC_name | Ppa-clc-1.2 | ||||
| 5 | 04 Feb 2020 15:43:57 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 May 2021 19:05:19 | WBPerson1983 | Name_change | CGC_name | Ppa-clc-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clc | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00107231 | Pristionchus pacificus | From_analysis | Inparanoid_8 | |||||
| WormBase-Compara | |||||||||
| WBGene00107233 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00273207 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00277372 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: Tight junction protein, Claudin-like and Tight junction protein, claudin-like. Is an ortholog of C. elegans clc-1. In C. elegans, clc-1 is involved in defense response to Gram-positive bacterium; epithelial cell-cell adhesion; and innate immune response. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA05840 | |||||||
| Corresponding_transcript | PPA05840.1 | ||||||||
| Other_sequence | DVC00501_1 | ||||||||
| EV852963.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_4864 | |||||||
| GPL14372_Probes_4865 | |||||||||
| GPL14372_Probes_4866 | |||||||||
| Remark | [190507 pad] The CGC name Ppa-clc-1.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [200204 pad] The CGC name Ppa-clc-1.2 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
