WormBase Tree Display for Gene: WBGene00063705

WBGene00063705 SMap: S_parent: Sequence: Crem_Contig2
  Identity: Version: 4
    Name: CGC_name: Cre-yif-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE08999
      Molecular_name: CRE08999
        CRE08999.1
        RP37955
      Other_name: cr01.sctg41.wum.91
      Public_name: Cre-yif-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:27 WBPerson1847 Event: Created
        2 03 Jul 2008 11:45:53 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE08999
                Other_name: cr01.sctg41.wum.91
        3 19 Dec 2008 11:56:08 WBPerson2970 Name_change: CGC_name: Cre-yif-1
        4 22 Dec 2008 13:39:18 WBPerson1867 Event: Acquires_merge: WBGene00080967
      Acquires_merge: WBGene00080967
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: yif
    RNASeq_FPKM: WBls:0000004 49.2541 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
        57.3249 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        65.3957 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
      WBls:0000024 10.004 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        10.577 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        10.6302 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        10.7739 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        10.9119 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        11.1098 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        11.143 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        11.2677 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        12.1656 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        12.3772 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        12.5303 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        13.0751 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        13.9945 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        14.3324 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        14.5326 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
        14.8257 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        14.8315 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        14.8721 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
        15.5944 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        15.8587 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        16.3281 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        16.6139 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        16.6583 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        17.2744 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        18.516 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        20.0888 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        21.5171 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        22.2477 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        23.5624 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        27.9226 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
        28.4582 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        29.4758 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        31.003 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        31.3649 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        31.5473 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        33.8742 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        34.6946 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        35.4861 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        6.08329 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        6.26425 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        6.88844 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
        7.15438 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        7.37318 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        7.55166 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        7.5914 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        7.81552 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        8.31221 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        8.72507 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        9.02489 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        9.62287 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        9.86262 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        9.88655 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        9.97734 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
      WBls:0000027 10.8587 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        47.7813 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        56.6028 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        57.1959 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        57.7891 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        65.8746 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
      WBls:0000038 11.5317 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        50.9661 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        68.731 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        72.6357 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 48.4029 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        52.2582 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        55.0516 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        55.2525 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        55.5103 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        55.969 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        59.5614 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        60.2718 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
      WBls:0000063 27.3847 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
        28.2652 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        29.3234 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        31.0467 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        32.3561 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        33.8491 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        35.3421 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        38.3668 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        42.8949 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        49.415 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        52.0203 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
        55.6194 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
      WBls:0000101 45.1483 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
        50.7177 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
    GO_annotation: 00159134
      00159135
    Ortholog: WBGene00010178 Caenorhabditis elegans From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00027396 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00140681 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130994 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00105305 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00192742 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00224764 Brugia malayi From_analysis: WormBase-Compara
      WBGene00242741 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g2183 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1979 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g4242 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g19552 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18980 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1542 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g10447 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g9838 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g20370 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g22971 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-yif-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g20037 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03617.g30753 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06416 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_020406 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10012 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1780 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50330200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g15404 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00258102 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289756 Trichuris muris From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of C. elegans yif-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE08999
    Corresponding_CDS_history: CRE08999:rp198
    Corresponding_transcript: CRE08999.1
    Other_sequence: Oden_isotig11521
      FC820744.1
      CRC08457_1
      HG02504
      Oden_isotig28065
      MAC00817_1
      CJC03704_1
      Dviv_isotig10421
      Dviv_isotig10419
      Oden_isotig11520
      Dviv_isotig10418
      Tcir_isotig25521
      CR09719
      SRC05467_1
      FC820482.1
      CJC08976_1
      PPC12370_1
      FC820754.1
      CR09718
      Acan_isotig01588
      RSC02299_1
      FC819591.1
      RS08662
      RSC00140_1
      SR03332
      MI04917
      HGC00281_1
      JI173155.1
      FC819991.1
      Acan_isotig01589
      MIC03892_1
      Dviv_isotig10420
  Experimental_info: Expr_pattern: Expr1114192
    Microarray_results: GPL14146_CRE08999_399-458_0.906_6_B
      GPL14146_CRE08999_437-496_0.833_35_C
      GPL14146_CRE08999_635-694_0.930_2_A
  Method: Gene