WormBase Tree Display for Gene: WBGene00058841

WBGene00058841 SMap: S_parent: Sequence: Crem_Contig8
  Identity: Version: 3
    Name: CGC_name: Cre-pcm-1 From_analysis: Inferred_from_orthology
      Sequence_name: CRE31088
      Molecular_name: CRE31088
        CRE31088.1
        RP21615
      Other_name: cr01.sctg13.wum.31
      Public_name: Cre-pcm-1
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:48 WBPerson2970 Name_change: CGC_name: Cre-pcm-1
        3 03 Jul 2008 11:45:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE31088
                Other_name: cr01.sctg13.wum.31
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pcm
    RNASeq_FPKM: WBls:0000004 18.8649 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        21.702 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        24.5391 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 11.4477 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
        12.1067 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
        15.1002 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
        15.1051 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
        15.3959 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
        16.2752 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
        16.7946 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
        16.8811 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
        17.0999 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
        17.3191 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
        17.4224 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
        18.1048 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
        18.5492 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
        18.7772 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
        19.0638 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
        19.0866 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
        19.1337 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
        19.5805 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
        19.7403 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
        20.1016 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
        20.1652 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
        20.2387 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
        20.2726 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
        20.6216 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
        20.8094 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
        21.0664 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
        21.9597 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
        23.0304 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
        23.2148 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
        23.2293 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
        23.2901 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
        23.3805 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
        23.9302 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
        24.4766 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
        24.5145 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
        24.8517 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
        25.0058 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
        25.2277 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
        25.8397 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
        26.1973 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
        26.3178 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
        27.1056 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
        27.5256 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
        28.1811 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
        30.792 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
        34.3806 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
        34.5599 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
        38.6922 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
        41.454 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
        8.32922 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
        8.90228 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
        9.41872 From_analysis: RNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
      WBls:0000027 2.66265 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
        4.01602 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        5.94155 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        6.1742 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        8.33238 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        8.75516 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
      WBls:0000038 11.6091 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        14.4194 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
        2.42653 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        9.48501 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
      WBls:0000041 13.9958 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        14.4231 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
        18.9673 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        30.5268 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        30.6025 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        42.2377 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        44.5219 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        49.0148 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
      WBls:0000063 11.262 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
        11.5675 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
        12.8436 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
        13.7677 From_analysis: RNASeq.remanei.WBls:0000063.control_mean
        14.3164 From_analysis: RNASeq.remanei.WBls:0000063.control_median
        15.7892 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
        16.6246 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
        18.9452 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
        19.0186 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
        0 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
        23.0258 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
        8.60078 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
      WBls:0000101 14.2076 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        16.0178 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    GO_annotation: 00154309
      00154310
    Ortholog: WBGene00003954 Caenorhabditis elegans From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030890 Caenorhabditis briggsae From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00146012 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00137916 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00235345 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00222398 Brugia malayi From_analysis: WormBase-Compara
      WBGene00230265 Brugia malayi From_analysis: WormBase-Compara
      WBGene00230823 Brugia malayi From_analysis: WormBase-Compara
      WBGene00243478 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00243814 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00203077 Pristionchus pacificus From_analysis: WormBase-Compara
      CBOVI.g2236 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g16322 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21347 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18491 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17844 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g22548 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11793 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2639 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP38.g2640 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g12626 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24555 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00654.g13196 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-pcm-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold491.g2086 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00241.g7765 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_17173 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017843 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05332 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9495 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50204300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14351 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00302793 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00060551 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable protein-L-isoaspartate (D-aspartate) O-methyltransferase activity. Predicted to be involved in protein modification process. Is an ortholog of C. elegans pcm-1. In C. elegans, pcm-1 is involved in multicellular organismal response to stress; regulation of autophagy; and response to starvation. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE31088
    Corresponding_transcript: CRE31088.1
    Other_sequence: EX548697.1
      TSC14478_1
      HC07284
      EX560661.1
      JO468056.1
      EV853566.1
      OVC01996_1
      EX548103.1
      EX555811.1
      FG621209.1
      Acan_isotig09304
      Oden_isotig14336
      EW743698.1
      JI463456.1
      NAC01300_1
      JI484000.1
      JI468902.1
      DVC01308_1
      JI479679.1
      EV852712.1
      AYC04025_1
      FE919859.1
      JI474297.1
      HCC04751_1
      EX550251.1
      JI171028.1
      JI465745.1
      EX500845.1
      Dviv_isotig11278
      Dviv_isotig11280
      JI175638.1
      CJC10519_1
      CR00794
      Name_isotig05090
      ACC06858_1
      CRC06970_1
      Oden_isotig14337
      EX556930.1
      EX538402.1
      AS14712
      JI460360.1
      Dviv_isotig11279
      AI130548.1
      OFC00490_1
      ACC20695_1
      ASC00176_1
      HC07871
      Dviv_isotig11277
      BG734509.1
      Hbac_isotig06624
      AE04949
      OF00170
      JI462399.1
  Experimental_info: Expr_pattern: Expr1099992
    Microarray_results: GPL14146_CRE31088_508-567_0.960_2_B
      GPL14146_CRE31088_583-642_0.949_3_C
      GPL14146_CRE31088_679-738_0.978_1_A
  Method: Gene