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WormBase Tree Display for Gene: WBGene00057913

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Name Class

WBGene00057913SMapS_parentSequenceCrem_Contig3
IdentityVersion3
NameCGC_nameCre-sos-1From_analysisInferred_from_orthology
Sequence_nameCRE18636
Molecular_nameCRE18636
CRE18636.1
RP29770
Other_namecr01.sctg10.wum.200
Public_nameCre-sos-1
SpeciesCaenorhabditis remanei
HistoryVersion_change109 Nov 2007 10:19:26WBPerson1847EventCreated
229 Nov 2007 17:00:48WBPerson2970Name_changeCGC_nameCre-sos-1
303 Jul 2008 11:45:15WBPerson4055EventImportedfrom NGASP
Name_changeSequence_nameCRE18636
Other_namecr01.sctg10.wum.200
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsos
RNASeq_FPKMWBls:000000433.3502From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
34.1852From_analysisRNASeq.remanei.WBls:0000004.control_mean
RNASeq.remanei.WBls:0000004.control_median
35.0201From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
WBls:000002411.2786From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511019
11.5551From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511013
11.9299From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511012
11.9705From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511018
12.9458From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510991
13.1654From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747488
13.1679From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511011
13.232From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511017
13.5958From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511016
13.8231From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311802
13.9811From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311798
14.6265From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511015
14.803From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510998
15.03From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747483
15.4857From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511001
15.6072From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747485
16.0784From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510995
16.2888From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510999
16.3619From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511014
16.3698From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511003
16.4862From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747486
16.5084From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747481
16.5594From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510994
16.6325From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747484
17.1585From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510989
17.6563From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747487
17.941From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510988
18.0711From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311799
18.3439From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510990
18.4965From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311800
18.5685From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511002
19.131From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511000
19.2561From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747482
19.6556From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511010
19.7255From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510997
20.3042From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511009
20.3906From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510996
20.4294From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511004
20.5681From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747479
20.6498From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747489
21.0827From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511006
21.4136From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747480
21.8129From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511008
22.2088From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511005
23.4712From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511007
23.8135From_analysisRNASeq.remanei.WBStrain00031117.WBls:0000024.Unknown.WBbt:0007833.SRP049403.SRX747490
25.6073From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511021
25.7873From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510992
26.9989From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX511020
28.8588From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510986
30.6216From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510987
32.0436From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP040962.SRX510993
7.52884From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311801
WBls:000002715.5178From_analysisRNASeq.remanei.WBls:0000027.control_mean
17.3098From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
18.3979From_analysisRNASeq.remanei.WBls:0000027.control_median
19.4859From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
20.6366From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
4.63908From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
WBls:000003815.4129From_analysisRNASeq.remanei.WBls:0000038.control_mean
18.5532From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
RNASeq.remanei.WBls:0000038.control_median
21.28From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
6.4056From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
WBls:000004120.9078From_analysisRNASeq.remanei.WBls:0000041.control_median
21.1961From_analysisRNASeq.remanei.WBls:0000041.control_mean
33.8669From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
35.8789From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
36.0974From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
6.13468From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
7.25039From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
7.94862From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
WBls:000006310.1185From_analysisRNASeq.remanei.WBls:0000063.control_mean
10.5865From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101887
11.166From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101889
11.3739From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101888
12.3404From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101886
16.2025From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Female.WBbt:0007833.SRP006033.SRX101890
4.88029From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101892
8.18234From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101894
8.73172From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101893
8.77282From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101891
8.94818From_analysisRNASeq.remanei.WBStrain00042077.WBls:0000063.Male.WBbt:0007833.SRP006033.SRX101895
9.76734From_analysisRNASeq.remanei.WBls:0000063.control_median
WBls:000010111.2699From_analysisRNASeq.remanei.total_over_all_stages.control_median
15.5785From_analysisRNASeq.remanei.total_over_all_stages.control_mean
GO_annotation00153423
00153424
00153425
OrthologWBGene00004947Caenorhabditis elegansFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00152850Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00108646Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00226342Brugia malayiFrom_analysisWormBase-Compara
WBGene00243462Onchocerca volvulusFrom_analysisWormBase-Compara
CBOVI.g301Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g10180Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g20698Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g14571Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g5636Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g26226Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g5282Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g16993Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g8371Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3730Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00180.g6356Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-sos-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15316Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02726.g27702Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_22699Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_019403Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07289Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_50075110Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g14020Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00257471Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294429Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00051706Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00052028Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00054934Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00065658Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00071955Caenorhabditis remaneiFrom_analysisWormBase-Compara
WBGene00072337Caenorhabditis remaneiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable guanyl-nucleotide exchange factor activity and protein heterodimerization activity. Predicted to be involved in small GTPase mediated signal transduction. Is an ortholog of C. elegans sos-1. In C. elegans, sos-1 is involved in several processes, including epidermal growth factor receptor signaling pathway; female gamete generation; and positive regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCRE18636
Corresponding_transcriptCRE18636.1
Other_sequenceHGC04233_1
MC02898
Acan_isotig07592
MCC02196_1
OOC02542_1
Hbac_isotig02047
JI166030.1
JI472095.1
HG08934
Experimental_infoExpr_patternExpr1108666
Microarray_resultsGPL14146_CRE18636_1191-1250_0.801_107_B
GPL14146_CRE18636_1977-2036_0.768_193_A
GPL14146_CRE18636_3324-3383_0.776_174_C
MethodGene