WormBase Tree Display for Gene: WBGene00044548
expand all nodes | collapse all nodes | view schema
| WBGene00044548 | SMap | S_parent | Sequence | R13D7 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cnc-9 | Person_evidence | WBPerson168 | |||||
| Sequence_name | R13D7.11 | ||||||||
| Molecular_name | R13D7.11 | ||||||||
| R13D7.11.1 | |||||||||
| CE38862 | |||||||||
| Other_name | CELE_R13D7.11 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | cnc-9 | ||||||||
| DB_info | Database | WormFlux | gene | WBGene00044548 | |||||
| NDB | locus_tag | CELE_R13D7.11 | |||||||
| NCBI | gene | 3896823 | |||||||
| RefSeq | protein | NM_001038411.4 | |||||||
| TrEMBL | UniProtAcc | Q4R175 | |||||||
| UniProt_GCRP | UniProtAcc | Q4R175 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 20 Jun 2005 08:50:33 | WBPerson1867 | Event | Created | |||
| 2 | 02 Feb 2006 09:28:57 | WBPerson2970 | Name_change | CGC_name | cnc-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cnc | ||||||||
| Allele (12) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog | WBGene00102230 | Pristionchus pacificus | From_analysis | OMA | |||||
| WBGene00080885 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00163465 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| chrV_pilon.g14690 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | cnc-9 encodes one of eleven C. elegans caenacin peptides. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 04 Jan 2010 00:00:00 | ||||||||
| Automated_description | Enriched in amphid sheath cell; excretory duct; and excretory pore based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on tiling array; RNA-seq; and microarray studies. Is affected by Colistin and nitroguanidine based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | R13D7.11 | |||||||
| Corresponding_transcript | R13D7.11.1 | ||||||||
| Other_sequence | EX013910.1 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00076618 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00069813 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017835 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115550 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00115487 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00069840 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1021836 | ||||||||
| Expr1155563 | |||||||||
| Expr2010269 | |||||||||
| Expr2028511 | |||||||||
| Drives_construct | WBCnstr00023482 | ||||||||
| Construct_product | WBCnstr00023482 | ||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (43) | |||||||||
| Map_info | Map | V | Position | 0.748618 | Error | 6.7e-05 | |||
| Positive | Positive_clone | R13D7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00060703 | ||||||||
| WBPaper00064708 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
