WormBase Tree Display for Gene: WBGene00042650

WBGene00042650 SMap: S_parent: Sequence: cb25.NA_192
  Identity: Version: 3
    Name: CGC_name: Cbr-dnj-9 From_analysis: Inferred_from_orthology
      Sequence_name: CBG24572
      Molecular_name: CBG24572
        CBG24572.1
        CBP46708
      Other_name: CBG_24572 Accession_evidence: NDB HE601411
      Public_name: Cbr-dnj-9
    DB_info: Database: NDB locus_tag CBG_24572
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:12 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 15 Oct 2007 15:19:45 WBPerson2970 Name_change: CGC_name: Cbr-dnj-9
        3 31 Aug 2016 10:30:13 WBPerson4025 Event: Split_into: WBGene00270330
      Split_into: WBGene00270330
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: dnj
    RNASeq_FPKM: WBls:0000002 0.000392 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.001012 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        16.4717 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        5.49103 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.000702 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        4.1183 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        7.7e-05 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.072854 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        18.4353 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        9.25408 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.003949 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        6.1707 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.000273 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0.020883 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.041492 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        0.000384 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.000817 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        0.083272 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.373394 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 0.000172 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0.000393 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.683338 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.04945 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        1.02492 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        14.0867 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        4.03418 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 4.45158 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 10.9117 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        11.8143 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        14.3116 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        14.5648 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        5.45342 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        9.31704 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 11.3353 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        22.4731 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        25.3255 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        25.9444 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        26.5633 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        26.6682 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        12.4271 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        14.4204 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        19.4566 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        19.8729 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 0.000231 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.000289 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0.000428 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.000605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        0.00093 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        8.7e-05 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.000216 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        0.00026 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.000393 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.041492 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        6.20175 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.02272 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        5.8201 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (29)
    Paralog: WBGene00026157 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00026912 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027017 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027863 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00028405 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029211 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032209 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032898 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034991 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035968 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: DnaJ domain; Chaperone J-domain superfamily; and DnaJ-like protein C11, C-terminal. Is an ortholog of C. elegans dnj-9. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG24572
    Corresponding_CDS_history: CBG24572:bp255
    Corresponding_transcript: CBG24572.1
    Other_sequence (21)
  Experimental_info: Expr_pattern: Expr1057329
    Microarray_results: GPL8303_CB6_WBGene00042650_A
      GPL8303_CB6_WBGene00042650_B
      GPL14143_CBG24572_1446-1505_0.823_64_B
      GPL14143_CBG24572_1632-1691_0.933_3_C
      GPL14143_CBG24572_1857-1916_0.851_34_A
    Expression_cluster: WBPaper00059178:Cbr-spr-4(gu163)_downregulated
  Method: Gene