WormBase Tree Display for Gene: WBGene00042388

WBGene00042388 SMap: S_parent: Sequence: cb25.NA_117
  Identity: Version: 3
    Name: Sequence_name: CBG24226
      Molecular_name: CBG24226
        CBG24226.1
        CBP13392
      Other_name: CBG_24226 Accession_evidence: NDB HE601527
      Public_name: CBG24226
    DB_info: Database: NDB locus_tag CBG_24226
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:12 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:52 WBPerson2970 Name_change: CGC_name: Cbr-sdz-28
        3 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Removed
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar00133945
      WBVar00133946
      WBVar00133947
      WBVar00133948
      WBVar00133949
      WBVar00133943
      WBVar00133944
    RNASeq_FPKM: WBls:0000002 0.188728 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.809174 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        0.885204 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        1.65771 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.059735 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.498951 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.678837 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.017776 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.035551 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.01185 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0.055974 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        0.111949 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.02239 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (11)
      WBls:0000027 0.092149 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        0.65966 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.88683 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        0.593769 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        0.768592 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.09539 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0.7286 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.584241 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        0.716958 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.849674 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        2.20774 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        7.39703 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0.169418 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        0.508362 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.547269 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        0.55348 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        0.559691 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        0.75707 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        0.351339 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        0.397283 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        0.463678 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        0.472276 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 0.923019 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        1.21573 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.48767 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        1.74937 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        2.02152 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        3.09889 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0.753026 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        1.3517 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        1.58331 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 0.584241 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.940333 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.502423 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        0.787538 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (28)
    Paralog (82)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; TRAF-like; SKP1/BTB/POZ domain superfamily; and BTB/POZ domain. Is an ortholog of C. elegans bath-21; bath-7; and sdz-28. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG24226
    Corresponding_transcript: CBG24226.1
  Experimental_info: Microarray_results: GPL8303_CB6_WBGene00040552_A
      GPL8303_CB6_WBGene00040552_B
      GPL8303_CB6_WBGene00040552_C
      GPL8303_CB6_WBGene00040552_D
      GPL8303_CB6_WBGene00040552_E
      GPL8303_CB6_WBGene00042388_A
      GPL8303_CB6_WBGene00042388_B
      GPL8303_CB6_WBGene00042388_C
      GPL8303_CB6_WBGene00042388_D
      GPL8303_CB6_WBGene00042388_E
  Remark: [180319 gw3] The CGC name Cbr-sdz-28 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson4025
  Method: Gene