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WormBase Tree Display for Gene: WBGene00042225

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Name Class

WBGene00042225SMapS_parentSequencecb25.NA_078
IdentityVersion2
NameCGC_nameCbr-aptf-2.2From_analysisInferred_from_orthology
Sequence_nameCBG24015
Molecular_nameCBG24015
CBG24015.1
CBP12696
Other_nameCBG_24015Accession_evidenceNDBHE601054
Public_nameCbr-aptf-2.2
DB_infoDatabaseNDBlocus_tagCBG_24015
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:12WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-aptf-2.2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classaptf
Allele (11)
RNASeq_FPKMWBls:000000211.5605From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.3176From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
14.3435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
8.02055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
12.1512From_analysisRNASeq.briggsae.WBls:0000002.control_mean
13.1205From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.9233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003118.408From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
119.011From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
119.614From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
102.499From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
113.507From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000471.3889From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
75.4508From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
79.5126From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
59.2569From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
61.1436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
65.6644From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
67.3933From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.836233From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
21.1752From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.47644From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
8.16262From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.23112From_analysisRNASeq.briggsae.WBls:0000027.control_median
8.61842From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.9858From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.45042From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.319576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
1.37958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
2.42805From_analysisRNASeq.briggsae.WBls:0000038.control_median
2.60235From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.47652From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
5.23371From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000411.91382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
32.1019From_analysisRNASeq.briggsae.WBls:0000041.control_mean
41.0368From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
41.3055From_analysisRNASeq.briggsae.WBls:0000041.control_median
41.5741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
43.8828From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
22.9722From_analysisRNASeq.briggsae.WBls:0000041.control_mean
23.5974From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.26749From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
6.15794From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006313.9019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
6.78568From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
7.90375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
8.02593From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
9.2048From_analysisRNASeq.briggsae.WBls:0000063.control_mean
9.40676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
12.067From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
8.71634From_analysisRNASeq.briggsae.WBls:0000063.control_median
9.68184From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010122.6635From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.90375From_analysisRNASeq.briggsae.total_over_all_stages.control_median
26.0844From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
8.71634From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00145402
00145403
00145404
Ortholog (59)
ParalogWBGene00028644Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00023927Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00025674Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Is an ortholog of C. elegans aptf-2.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG24015
Corresponding_CDS_historyCBG24015:bp194
Corresponding_transcriptCBG24015.1
Other_sequenceCRC04167_1
CR05627
Experimental_infoExpr_patternExpr1059071
Microarray_resultsGPL8303_CB6_WBGene00042225_A
GPL8303_CB6_WBGene00042225_B
GPL14143_CBG24015_570-629_0.926_5_A
MethodGene