WormBase Tree Display for Gene: WBGene00041892

WBGene00041892 SMap: S_parent: Sequence: cb25.NA_005
  Identity: Version: 5
    Name: CGC_name: Cbr-rab-11.2.2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG23562
      Molecular_name: CBG23562
        CBG23562.1
        CBP47904
      Other_name: CBG_23562 Accession_evidence: NDB HE601127
      Public_name: CBG23562
    DB_info: Database: NDB locus_tag CBG_23562
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:11 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbr-rab-11.2.2
        3 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:28 WBPerson1983 Name_change: CGC_name: Cbr-rab-11.2.2
        5 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-rab-11.2.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: rab
    RNASeq_FPKM: WBls:0000002 12.7764 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        16.3652 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        27.4956 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        8.82376 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        20.136 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        21.8197 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        38.1829 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 0.822977 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        1.41533 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        2.00768 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0.943552 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 3.7848 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        4.14649 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        4.50819 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        2.47307 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        3.45662 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        4.60027 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        8.77869 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 17.2368 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        1.73802 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        42.0535 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        7.91898 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        23.3496 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        24.8035 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        41.6881 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 11.5951 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 16.2336 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        17.1694 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        18.1052 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        24.5926 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        5.40383 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        58.6279 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
      WBls:0000041 11.973 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        15.2416 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        15.3735 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.5053 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        20.7963 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        40.4654 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        16.3846 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        17.264 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        21.6273 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        29.3145 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
      WBls:0000063 13.0862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        14.1978 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        17.215 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        18.0538 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        20.0699 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        25.7002 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        15.7064 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        15.9375 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        5.3556 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 14.1978 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        15.914 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        13.642 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        16.0005 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00145160
      00145161
    Ortholog (55)
    Paralog (31)
    Structured_description: Automated_description: Predicted to enable GTP binding activity and GTPase activity. Is an ortholog of C. elegans rab-11.2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG23562
    Corresponding_CDS_history: CBG23562:bp194
      CBG23562:bp257
    Corresponding_transcript: CBG23562.1
    Other_sequence: Acan_isotig09084
  Experimental_info: Expr_pattern: Expr1056567
    Microarray_results: GPL8303_CB6_WBGene00041892_A
      GPL14143_CBG23562_96-155_0.915_3_C
      GPL14143_CBG23562_248-307_0.924_2_B
      GPL14143_CBG23562_444-503_0.952_1_A
    Expression_cluster: WBPaper00058955:heatshock_upregulated_CBG
  Remark: [190208 pad] The CGC name Cbr-rab-11.2.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Cbr-rab-11.2.2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene