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WormBase Tree Display for Gene: WBGene00041843

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Name Class

WBGene00041843SMapS_parentSequencecb25.fpc4470
IdentityVersion4
NameCGC_nameCbr-pals-38From_analysisInferred_from_orthology
Sequence_nameCBG23493
Molecular_nameCBG23493
CBG23493.1
CBP20717
Other_nameCBG_23493Accession_evidenceNDBHE601533
Public_nameCbr-pals-38
DB_infoDatabaseNDBlocus_tagCBG_23493
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:11WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-pals-38
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:24WBPerson1983Name_changeCGC_nameCbr-pals-38
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameCbr-pals-38
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpals
RNASeq_FPKMWBls:000000212.2305From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.2544From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.28949From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
7.59146From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.67538From_analysisRNASeq.briggsae.WBls:0000002.control_median
6.06127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.20892From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000314.0579From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
17.4195From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
20.7812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
16.9635From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
17.2675From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000413.9143From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
15.925From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
17.9357From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
14.4892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
15.0099From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
15.3425From_analysisRNASeq.briggsae.WBls:0000004.control_mean
15.3636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.156101From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.556264From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.82968From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.77667From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.36554From_analysisRNASeq.briggsae.WBls:0000027.control_median
3.66596From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.17482From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.96841From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.777577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
10.3745From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.62792From_analysisRNASeq.briggsae.WBls:0000038.control_mean
7.37314From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
7.6798From_analysisRNASeq.briggsae.WBls:0000038.control_median
7.98647From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004111.7075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
17.4057From_analysisRNASeq.briggsae.WBls:0000041.control_mean
18.6242From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
18.6896From_analysisRNASeq.briggsae.WBls:0000041.control_median
18.755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
20.5361From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
13.0712From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
16.642From_analysisRNASeq.briggsae.WBls:0000041.control_mean
17.1583From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
17.8913From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
4.81345From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.04425From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
5.07537From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.09528From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
7.85235From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
5.0251From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.57937From_analysisRNASeq.briggsae.WBls:0000063.control_median
6.08338From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001017.77667From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.70283From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.91941From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.54624From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (21)
ParalogWBGene00041840Caenorhabditis briggsaeFrom_analysisInparanoid_8
Structured_descriptionAutomated_descriptionIs affected by Cbr-htz-1 and Cbr-spr-4 based on RNA-seq studies. Is an ortholog of C. elegans pals-38.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG23493
Corresponding_CDS_historyCBG23493:bp194
Corresponding_transcriptCBG23493.1
Experimental_infoExpr_patternExpr1056746
Microarray_resultsGPL8303_CB6_WBGene00041843_A
GPL8303_CB6_WBGene00041843_B
GPL14143_CBG23493_1052-1111_0.770_39_A
Expression_clusterWBPaper00051137:Santeuil-virus_upregulated_JU1264
WBPaper00059178:Cbr-htz-1(gu167)_upregulated
WBPaper00059178:Cbr-spr-4(gu163)_upregulated
Remark[190208 pad] The CGC name Cbr-pals-38 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cbr-pals-38 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene