WormBase Tree Display for Gene: WBGene00040469

WBGene00040469 SMap: S_parent: Sequence: cb25.fpc4260b
  Identity: Version: 5
    Name: CGC_name: Cbr-aly-2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG21776
      Molecular_name: CBG21776
        CBG21776.1
        CBP47470
      Other_name: CBG_21776 Accession_evidence: NDB HE600966
      Public_name: Cbr-aly-2
    DB_info: Database: NDB locus_tag CBG_21776
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:10 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Oct 2016 12:05:24 WBPerson4025 Event: Split_into: WBGene00271408
        3 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-aly-2
        4 08 Feb 2019 15:42:28 WBPerson1983 Name_change: CGC_name: Removed
        5 08 May 2019 10:09:24 WBPerson1983 Name_change: CGC_name: Cbr-aly-2
        6 28 May 2021 19:05:20 WBPerson1983 Name_change: CGC_name: Removed
        7 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Cbr-aly-2
      Split_into: WBGene00271408
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: aly
    RNASeq_FPKM: WBls:0000002 100.92 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        101.438 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        80.6918 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        94.3499 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        101.179 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        109.27 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        154.03 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
      WBls:0000003 522.142 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        551.101 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        580.059 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
        615.985 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        745.755 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 230.339 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        234.717 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        239.096 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        228.744 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        240.823 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        243.991 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        261.946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 13.2821 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        19.5576 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.69667 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        41.6941 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        20.2218 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        21.4586 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        27.1614 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 21.1358 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 24.5932 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        25.7086 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        29.8058 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        31.903 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        33.9031 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        43.4072 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 116.668 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        180.741 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        198.701 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        198.969 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        199.237 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        208.359 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        140.804 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        143.362 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        167.855 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        171.031 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 134.327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        85.9327 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        86.5559 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        87.0698 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        96.4926 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        98.0756 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        100.602 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        113.234 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        91.7812 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
      WBls:0000101 118.574 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        85.9327 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        144.676 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        98.7063 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00143887
    Ortholog (44)
    Paralog: WBGene00028541 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00040468 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00039093 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040470 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00271408 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable nucleic acid binding activity. Is an ortholog of C. elegans aly-2. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG21776
    Corresponding_CDS_history: CBG21776:bp214
      CBG21776:bp256
    Corresponding_transcript: CBG21776.1
    Other_sequence (11)
  Experimental_info: Microarray_results: GPL8303_CB6_WBGene00040469_A
  Remark: [190208 pad] The CGC name Cbr-aly-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Cbr-aly-2 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene