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WormBase Tree Display for Gene: WBGene00040158

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Name Class

WBGene00040158SMapS_parentSequencecb25.fpc4243
IdentityVersion4
NameCGC_nameCbr-lgc-45From_analysisInferred_from_orthology
Sequence_nameCBG21354
Molecular_nameCBG21354
CBG21354.1
CBP47093
Other_nameCBG_21354Accession_evidenceNDBHE601136
CBG_21355
CBG_21357
Public_nameCbr-lgc-45
DB_infoDatabaseNDBlocus_tagCBG_21354
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:10WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:50WBPerson2970Name_changeCGC_nameCbr-lgc-45
331 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00040159
431 Aug 2016 10:29:43WBPerson4025EventAcquires_mergeWBGene00040161
Acquires_mergeWBGene00040159
WBGene00040161
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
AlleleWBVar00031057
WBVar00031042
WBVar00031062
WBVar00031047
WBVar00031032
WBVar00031037
WBVar00031067
WBVar00031052
RNASeq_FPKMWBls:00000024.27512From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.5029From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.07675From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.15682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.82286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.58289From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.17593From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.152915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.548759From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.944602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.783122From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.25185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000041.8072From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.27634From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
2.74547From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
2.26748From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
2.44506From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.59457From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
2.81058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000271.06413From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.1816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.03941From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.76171From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.3718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
7.16424From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.20561From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003510.6747From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.4074From_analysisRNASeq.briggsae.WBls:0000038.control_median
11.5611From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.19825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
12.4497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.61567From_analysisRNASeq.briggsae.WBls:0000038.control_mean
9.25363From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.39277From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.74505From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.96218From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.1793From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.27882From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.79814From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.44535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
2.21486From_analysisRNASeq.briggsae.WBls:0000041.control_mean
2.72853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000631.72656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
1.84948From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.07555From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.48882From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.82802From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.96451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.45179From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.02751From_analysisRNASeq.briggsae.WBls:0000063.control_mean
5.72095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001013.03941From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.05138From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
2.77802From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.69747From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00143678
00143679
00143680
00143681
00143682
00143683
Ortholog (29)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-45.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG21354
Corresponding_CDS_historyCBG21354:bp255
Corresponding_transcriptCBG21354.1
Other_sequence (26)
Experimental_infoExpr_patternExpr1054896
Expr1065441
Expr1065963
Microarray_resultsGPL8303_CB6_WBGene00040158_A
GPL8303_CB6_WBGene00040158_B
GPL8303_CB6_WBGene00040159_A
GPL8303_CB6_WBGene00040159_B
GPL8303_CB6_WBGene00040161_A
GPL14143_CBG21354_375-434_0.926_17_B
GPL14143_CBG21354_744-803_0.929_13_C
GPL14143_CBG21354_833-892_0.951_2_A
GPL14143_CBG21355_1079-1138_0.908_10_A
GPL14143_CBG21357_156-215_0.938_1_A
MethodGene