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WormBase Tree Display for Gene: WBGene00039682

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Name Class

WBGene00039682SMapS_parentSequencecb25.fpc4206c
IdentityVersion2
NameCGC_nameCbr-lin-38From_analysisInferred_from_orthology
Sequence_nameCBG20757
Molecular_nameCBG20757
CBG20757.1
CBP45940
Other_nameCBG_20757Accession_evidenceNDBHE600928
Public_nameCbr-lin-38
DB_infoDatabaseNDBlocus_tagCBG_20757
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:09WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:10WBPerson4025Name_changeCGC_nameCbr-lin-38
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000216.7702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
34.6853From_analysisRNASeq.briggsae.WBls:0000002.control_mean
36.1421From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
51.1436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
35.7982From_analysisRNASeq.briggsae.WBls:0000002.control_mean
37.6395From_analysisRNASeq.briggsae.WBls:0000002.control_median
39.137From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003155.993From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
180.766From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
205.538From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
149.004From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
170.178From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000470.0658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
73.1128From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
76.1599From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
66.4739From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
73.7996From_analysisRNASeq.briggsae.WBls:0000004.control_mean
77.9629From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
78.3353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000271.08495From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
17.1055From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
3.37926From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.1899From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.2424From_analysisRNASeq.briggsae.WBls:0000027.control_median
14.8119From_analysisRNASeq.briggsae.WBls:0000027.control_mean
37.6781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003525.2078From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.2506From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
21.3811From_analysisRNASeq.briggsae.WBls:0000038.control_mean
23.046From_analysisRNASeq.briggsae.WBls:0000038.control_median
31.8414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
34.2397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
5.19256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004137.0342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
61.6425From_analysisRNASeq.briggsae.WBls:0000041.control_mean
65.4105From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
67.698From_analysisRNASeq.briggsae.WBls:0000041.control_median
69.9855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
74.1397From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
50.9737From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
53.495From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
58.5064From_analysisRNASeq.briggsae.WBls:0000041.control_mean
59.4528From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006320.0102From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
24.8135From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
25.2211From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.231From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
27.3625From_analysisRNASeq.briggsae.WBls:0000063.control_mean
41.5365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
25.226From_analysisRNASeq.briggsae.WBls:0000063.control_median
29.1009From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.7933From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010125.231From_analysisRNASeq.briggsae.total_over_all_stages.control_median
42.2927From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
36.5882From_analysisRNASeq.briggsae.total_over_all_stages.control_median
47.8247From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (22)
Structured_descriptionAutomated_descriptionIs an ortholog of C. elegans lin-38. In C. elegans, lin-38 is involved in negative regulation of vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG20757
Corresponding_CDS_historyCBG20757:bp194
CBG20757:bp255
Corresponding_transcriptCBG20757.1
Other_sequenceCRC02478_1
CR00429
JI482015.1
FG583401.1
CR05651
BM01130
CRC09816_1
Experimental_infoExpr_patternExpr1059768
Microarray_resultsGPL8303_CB6_WBGene00039682_A
GPL8303_CB6_WBGene00039682_B
GPL14143_CBG20757_603-662_0.778_48_C
GPL14143_CBG20757_790-849_0.635_221_B
GPL14143_CBG20757_948-1007_0.697_156_A
MethodGene