WormBase Tree Display for Gene: WBGene00039574

WBGene00039574 SMap: S_parent: Sequence: cb25.fpc4206a
  Identity: Version: 4
    Name: CGC_name: Cbr-acs-11 From_analysis: Inferred_from_orthology
      Sequence_name: CBG20626
      Molecular_name: CBG20626
        CBG20626.1
        CBP19968
      Other_name: CBG_20626 Accession_evidence: NDB HE600991
      Public_name: Cbr-acs-11
    DB_info: Database: NDB locus_tag CBG_20626
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:09 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-acs-11
        3 11 Sep 2008 10:15:14 WBPerson2970 Name_change: CGC_name: Removed
        4 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Cbr-acs-11
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: acs
    Allele: WBVar00029432
    RNASeq_FPKM: WBls:0000002 47.3823 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        47.9785 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        55.5272 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        71.2208 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        33.8941 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        47.6804 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        50.1189 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 23.4967 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        28.7388 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        33.9808 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        30.0767 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        32.7525 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 19.731 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBls:0000004.control_median
        19.8715 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        20.0121 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        16.7964 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        19.2943 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        19.4842 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        21.5873 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
      WBls:0000024 (12)
      WBls:0000027 10.0047 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        19.6313 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        2.519 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        46.3703 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        28.1875 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        34.166 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        77.7702 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 76.0655 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 14.5984 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        204.278 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        68.1901 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        73.2959 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        78.4017 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        91.3671 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
      WBls:0000041 58.5047 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        62.969 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        67.3 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        67.36 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        71.7511 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        75.9751 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        68.5724 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        70.1618 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        71.0564 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        88.5659 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 27.4241 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        31.0862 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        33.6979 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        34.0513 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        34.9995 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        43.0489 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        34.3487 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        38.6063 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        61.3811 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 46.3703 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        52.3733 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        44.8546 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        51.0379 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (41)
    Paralog: WBGene00026443 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032224 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033972 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00034053 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00037984 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00038255 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00040885 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: AMP-binding enzyme; ANL, N-terminal domain; AMP-binding enzyme C-terminal domain; AMP-binding enzyme, C-terminal domain; and AMP-dependent synthetase/ligase. Is an ortholog of C. elegans acs-11. In C. elegans, acs-11 is involved in IRE1-mediated unfolded protein response. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG20626
    Corresponding_CDS_history: CBG20626:bp194
    Corresponding_transcript: CBG20626.1
    Other_sequence (33)
  Experimental_info: Expr_pattern: Expr1057413
    Microarray_results: GPL8303_CB6_WBGene00039574_A
      GPL14143_CBG20626_1178-1237_0.795_11_A
      GPL14143_CBG20626_1263-1322_0.787_16_B
      GPL14143_CBG20626_1327-1386_0.786_18_C
  Method: Gene