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WormBase Tree Display for Gene: WBGene00038820

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Name Class

WBGene00038820SMapS_parentSequencecb25.fpc4131
IdentityVersion3
NameSequence_nameCBG19640
Molecular_nameCBG19640
CBG19640.1
CBP19634
Other_nameCBG_19640Accession_evidenceNDBHE601321
Public_nameCBG19640
DB_infoDatabaseNDBlocus_tagCBG_19640
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-bath-31
308 Feb 2019 15:42:29WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00127639
WBVar00127640
WBVar00127641
WBVar00127629
WBVar00127630
WBVar00127642
WBVar00127637
WBVar00127631
WBVar00127638
WBVar00127632
RNASeq_FPKMWBls:00000021.32788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.37639From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.30228From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.20257From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.95685From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.36104From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.53731From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000031.89868From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
2.39742From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
2.89617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
2.43032From_analysisRNASeq.briggsae.WBls:0000003.control_mean
2.49611From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.972394From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.11794From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.26348From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1.23984From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.24788From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
1.27734From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.43809From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.289493From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.364935From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.805312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.359825From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.38124From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0.430157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.593434From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.513658From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.618465From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.22681From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.63052From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.83516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.55478From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000412.98091From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
3.23556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.45121From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.48724From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.73892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
3.84945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
3.78033From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.79418From_analysisRNASeq.briggsae.WBls:0000041.control_median
3.8979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
4.97924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000631.81145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
2.59024From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
2.92263From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.59597From_analysisRNASeq.briggsae.WBls:0000063.control_mean
4.5574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.09811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.22342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
2.75643From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.36721From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001011.37639From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.96184From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.62477From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.03739From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (41)
Paralog (82)
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: MATH/TRAF domain; MATH domain; TRAF-like; SKP1/BTB/POZ domain superfamily; and BTB/POZ domain. Is an ortholog of C. elegans bath-13 and bath-31.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19640
Corresponding_CDS_historyCBG19640:bp194
Corresponding_transcriptCBG19640.1
Experimental_infoMicroarray_resultsGPL8303_CB6_WBGene00038820_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
Remark[190208 pad] The CGC name Cbr-bath-31 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene