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WormBase Tree Display for Gene: WBGene00038550

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Name Class

WBGene00038550SMapS_parentSequencecb25.fpc4126
IdentityVersion6
NameCGC_nameCbr-his-41From_analysisInferred_from_orthology
Sequence_nameCBG19304
Molecular_nameCBG19304
CBG19304.1
CBP04494
Other_nameCBG_19304Accession_evidenceNDBHE601047
Cbr-his-48From_analysisInferred_from_orthology
Public_nameCbr-his-41
DB_infoDatabaseNDBlocus_tagCBG_19304
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:08WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-his-41
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:21WBPerson1983Name_changeCGC_nameCbr-his-41
504 Feb 2020 15:43:56WBPerson1983Name_changeCGC_nameCbr-his-48
Other_nameCbr-his-41
604 Jun 2020 14:38:21WBPerson1983Name_changeCGC_nameCbr-his-41
Other_nameCbr-his-48
728 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classhis
RNASeq_FPKMWBls:0000002156.283From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
168.586From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
179.454From_analysisRNASeq.briggsae.WBls:0000002.control_mean
213.494From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
131.781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
162.434From_analysisRNASeq.briggsae.WBls:0000002.control_median
167.536From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:0000003346.291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
433.983From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
521.675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
331.206From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
399.724From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:0000004241.186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
247.46From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
253.733From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
273.13From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
300.375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
330.014From_analysisRNASeq.briggsae.WBls:0000004.control_mean
581.645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:0000027156.175From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
228.183From_analysisRNASeq.briggsae.WBls:0000027.control_mean
478.46From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
49.9152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
233.036From_analysisRNASeq.briggsae.WBls:0000027.control_median
248.612From_analysisRNASeq.briggsae.WBls:0000027.control_mean
309.897From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035348.728From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038149.725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
210.338From_analysisRNASeq.briggsae.WBls:0000038.control_mean
223.729From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
224.096From_analysisRNASeq.briggsae.WBls:0000038.control_median
224.464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
243.435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041136.665From_analysisRNASeq.briggsae.WBls:0000041.control_mean
278.517From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
80.0654From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
92.1444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
94.0381From_analysisRNASeq.briggsae.WBls:0000041.control_median
95.9319From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
180.044From_analysisRNASeq.briggsae.WBls:0000041.control_median
181.548From_analysisRNASeq.briggsae.WBls:0000041.control_mean
264.156From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
278.476From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
37.1822From_analysisRNASeq.briggsae.WBls:0000063.control_mean
37.5186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
41.5826From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
47.1355From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
59.6741From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
44.3591From_analysisRNASeq.briggsae.WBls:0000063.control_median
47.1439From_analysisRNASeq.briggsae.WBls:0000063.control_mean
96.9524From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101213.494From_analysisRNASeq.briggsae.total_over_all_stages.control_median
215.858From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
232.303From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
232.825From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00142053
00142054
00142055
00142056
Ortholog (143)
ParalogWBGene00028219Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032089Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00024732Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028216Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028247Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00028398Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041797Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041801Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041804Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00088321Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. Is an ortholog of C. elegans his-48; his-4; and his-41.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG19304
Corresponding_CDS_historyCBG19304:bp194
Corresponding_transcriptCBG19304.1
Other_sequence (56)
Experimental_infoExpr_patternExpr1058421
Microarray_resultsGPL8303_CB6_WBGene00038550_A
GPL8303_CB6_WBGene00038550_B
GPL14143_CBG19304_63-122_0.953_1_A
Remark[190208 pad] The CGC name Cbr-his-41 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Cbr-his-41 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene