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WormBase Tree Display for Gene: WBGene00037987

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Name Class

WBGene00037987SMapS_parentSequencecb25.fpc4109
IdentityVersion5
NameCGC_nameCbr-atx-3From_analysisInferred_from_orthology
Sequence_nameCBG18600
Molecular_nameCBG18600
CBG18600.1
CBP10927
Other_nameCBG_18600Accession_evidenceNDBHE601466
Public_nameCbr-atx-3
DB_infoDatabaseNDBlocus_tagCBG_18600
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-atx-3
324 Jul 2008 11:56:42WBPerson1847EventAcquires_mergeWBGene00037988
425 Oct 2016 11:00:21WBPerson2970Name_changeCGC_nameCbr-mdt-28
Other_nameCbr-atx-3
520 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-atx-3
Acquires_mergeWBGene00037988
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classatx
RNASeq_FPKMWBls:00000024.99677From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
6.40211From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.07428From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.13529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
6.86215From_analysisRNASeq.briggsae.WBls:0000002.control_mean
7.10478From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.24228From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000311.4402From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
15.4323From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
7.44818From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
11.7955From_analysisRNASeq.briggsae.WBls:0000003.control_mean
12.506From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000410.3575From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
12.5095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
8.20548From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
10.4908From_analysisRNASeq.briggsae.WBls:0000004.control_mean
11.3199From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
13.7026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
6.71641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.250575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.63356From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
2.79999From_analysisRNASeq.briggsae.WBls:0000027.control_mean
6.51584From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.21865From_analysisRNASeq.briggsae.WBls:0000027.control_median
2.80093From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.80373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000352.3484From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.91636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
3.43872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
3.4952From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.55168From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.59567From_analysisRNASeq.briggsae.WBls:0000038.control_mean
5.47594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004117.0973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
18.9116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
19.6691From_analysisRNASeq.briggsae.WBls:0000041.control_mean
19.8972From_analysisRNASeq.briggsae.WBls:0000041.control_median
20.8829From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.7847From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
18.8287From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
21.3275From_analysisRNASeq.briggsae.WBls:0000041.control_mean
30.4598From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.99256From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
6.47337From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.17137From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.94627From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
9.25663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.02164From_analysisRNASeq.briggsae.WBls:0000063.control_mean
8.55882From_analysisRNASeq.briggsae.WBls:0000063.control_median
9.76301From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.99256From_analysisRNASeq.briggsae.total_over_all_stages.control_median
7.38834From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
7.10478From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.64748From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141525
00141526
Ortholog (29)
Structured_descriptionAutomated_descriptionPredicted to enable cysteine-type deubiquitinase activity. Is an ortholog of C. elegans atx-3. In C. elegans, atx-3 is involved in chemical synaptic transmission.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18600
Corresponding_CDS_historyCBG18600:bp194
CBG18600:bp207
Corresponding_transcriptCBG18600.1
Other_sequencePT04559
PPC10479_1
JI173670.1
CR00590
PT01999
CRC03012_1
JI479339.1
HC06931
Experimental_infoExpr_patternExpr1055424
Microarray_resultsGPL8303_CB6_WBGene00037987_A
GPL8303_CB6_WBGene00037987_B
GPL8303_CB6_WBGene00037987_C
GPL14143_CBG18600_355-414_0.773_110_C
GPL14143_CBG18600_535-594_0.901_21_A
GPL14143_CBG18600_601-660_0.875_33_B
MethodGene