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WormBase Tree Display for Gene: WBGene00037846

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Name Class

WBGene00037846SMapS_parentSequencecb25.fpc4087
IdentityVersion2
NameCGC_nameCbr-lgc-35From_analysisInferred_from_orthology
Sequence_nameCBG18417
Molecular_nameCBG18417a
CBG18417a.1
CBP47206
CBG18417b
CBP44085
CBG18417b.1
Other_nameCBG_18417Accession_evidenceNDBHE601503
Public_nameCbr-lgc-35
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbr-lgc-35
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
AlleleWBVar00044232
WBVar00044227
RNASeq_FPKMWBls:00000020.710396From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.76011From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.04498From_analysisRNASeq.briggsae.WBls:0000002.control_mean
3.66442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.05461From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.40736From_analysisRNASeq.briggsae.WBls:0000002.control_median
1.79738From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.183302From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.195797From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.208291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
0.247386From_analysisRNASeq.briggsae.WBls:0000003.control_mean
0.350564From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040.553688From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0.804569From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.05545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.300602From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.382308From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.414261From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.541262From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000270.151486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.314933From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.97284From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.4521From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.928241From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.11502From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.54155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000351.45654From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.145129From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
0.743062From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.32236From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.42173From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.90165From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.89709From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.190725From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.194386From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.251842From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.309299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.5779From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.61719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.878715From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.986007From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.44813From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2.15631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.278981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.301046From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.368723From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.422446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.43508From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.374801From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.395584From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.743577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.553688From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.05373From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.632042From_analysisRNASeq.briggsae.total_over_all_stages.control_median
1.025From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00141396
00141397
00141398
00141399
00141400
00141401
Ortholog (25)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-35.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18417a
CBG18417b
Corresponding_CDS_historyCBG18417:bp194
CBG18417:bp255
Corresponding_transcriptCBG18417a.1
CBG18417b.1
Other_sequencePVC02352_1
Tcol_isotig08909
FC553416.1
FC544023.1
ACC14314_1
Acan_isotig12160
EL890692.1
MH08870
Tcol_isotig08908
FC550114.1
Experimental_infoExpr_patternExpr1066522
Microarray_resultsGPL8303_CB6_WBGene00037846_A
GPL8303_CB6_WBGene00037846_B
GPL14143_CBG18417_833-892_0.894_2_B
GPL14143_CBG18417_1069-1128_0.936_1_A
GPL14143_CBG18417_1209-1268_0.858_15_C
MethodGene