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WormBase Tree Display for Gene: WBGene00036943

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Name Class

WBGene00036943SMapS_parentSequencecb25.fpc4066
IdentityVersion3
NameCGC_nameCbr-lgc-41From_analysisInferred_from_orthology
Sequence_nameCBG17253
Molecular_nameCBG17253
CBG17253.1
CBP44053
Other_nameCBG_17253Accession_evidenceNDBHE601483
CBG_27584
Public_nameCbr-lgc-41
DB_infoDatabaseNDBlocus_tagCBG_17253
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:06WBPerson1971EventImportedInitial conversion from brigace
221 Apr 2008 17:10:50WBPerson2970Name_changeCGC_nameCbr-lgc-41
331 Aug 2016 10:29:44WBPerson4025EventAcquires_mergeWBGene00088998
Acquires_mergeWBGene00088998
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlgc
Allele (24)
RNASeq_FPKMWBls:00000020.384996From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.607068From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.705824From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.730383From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.490742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.577986From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.598283From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.043627From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.087253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.029084From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.278886From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.557771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.100938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.106702From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.237546From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.422317From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:00000270.150774From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
0.190274From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0.794763From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.04324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.819957From_analysisRNASeq.briggsae.WBls:0000027.control_median
0.958482From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.44964From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.72853From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.760288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.930849From_analysisRNASeq.briggsae.WBls:0000038.control_median
1.09401From_analysisRNASeq.briggsae.WBls:0000038.control_mean
1.10141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.51434From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.139349From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.166801From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.27597From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.371908From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.38514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.796343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.480422From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.5377From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.69026From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
0.704638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.095642From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.246668From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.257255From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.411656From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.468785From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.280992From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.334455From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.452617From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001010.411656From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.613684From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.437467From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.584597From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00140340
00140341
00140342
00140343
00140344
00140345
Ortholog (29)
Paralog (104)
Structured_descriptionAutomated_descriptionPredicted to enable extracellular ligand-gated monoatomic ion channel activity and transmembrane signaling receptor activity. Predicted to be involved in monoatomic ion transmembrane transport. Predicted to be located in membrane. Is an ortholog of C. elegans lgc-41.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG17253
Corresponding_CDS_historyCBG17253:bp194
CBG17253:bp255
Corresponding_transcriptCBG17253.1
Other_sequenceJI250099.1
TDC00111_1
EF619540.1
JI242997.1
CB043670.1
Tcir_isotig28716
JI239432.1
Experimental_infoExpr_patternExpr1055240
Expr1062707
Microarray_resultsGPL14143_CBG17253_558-617_0.773_18_B
GPL14143_CBG17253_709-768_0.738_40_C
GPL14143_CBG17253_734-793_0.761_29_A
GPL14143_CBG27584_94-153_0.929_1_A
MethodGene