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WormBase Tree Display for Gene: WBGene00034554

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Name Class

WBGene00034554SMapS_parentSequencecb25.fpc3835
IdentityVersion4
NameCGC_nameCbr-lin-1From_analysisInferred_from_orthology
Sequence_nameCBG13868
Molecular_nameCBG13868
CBG13868.1
CBP33180
Other_nameCBG_13868Accession_evidenceNDBHE601467
Cbr-elk-2From_analysisInferred_from_orthology
Public_nameCbr-lin-1
DB_infoDatabaseNDBlocus_tagCBG_13868
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:04WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-lin-1
308 Nov 2011 16:20:11WBPerson2970Name_changeCGC_nameCbr-elk-2
Other_nameCbr-lin-1
420 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-lin-1
Other_nameCbr-elk-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlin
RNASeq_FPKMWBls:000000211.6756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
14.1656From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.196From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
16.6253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
10.4978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
12.9358From_analysisRNASeq.briggsae.WBls:0000002.control_median
13.2487From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000034.98529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.17339From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
5.36148From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.90575From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
4.75084From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000426.0831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
28.7018From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
31.3205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
23.5267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
27.2541From_analysisRNASeq.briggsae.WBls:0000004.control_mean
27.6022From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
27.7382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002714.5234From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.80638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
32.0104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
8.75354From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
18.3251From_analysisRNASeq.briggsae.WBls:0000027.control_mean
19.2418From_analysisRNASeq.briggsae.WBls:0000027.control_median
29.73From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003534.179From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003819.4436From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
20.697From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.7358From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.0281From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
34.8622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.45416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004112.1855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
4.58574From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
4.58778From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
4.81427From_analysisRNASeq.briggsae.WBls:0000041.control_median
5.04077From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
6.59995From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.91817From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.97947From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.5181From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.79061From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.67956From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.2486From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
7.0751From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
7.3327From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
7.7414From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.3479From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.2039From_analysisRNASeq.briggsae.WBls:0000063.control_median
9.68959From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010111.6756From_analysisRNASeq.briggsae.total_over_all_stages.control_median
14.7082From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
11.0867From_analysisRNASeq.briggsae.total_over_all_stages.control_median
15.051From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00138030
00138031
00138032
Ortholog (29)
Paralog (14)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity and sequence-specific DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans lin-1. In C. elegans, lin-1 is involved in several processes, including egg-laying behavior; negative regulation of transcription by RNA polymerase II; and vulval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG13868
Corresponding_CDS_historyCBG13868:bp194
Corresponding_transcriptCBG13868.1
Other_sequenceCGC00883_1
JI482944.1
JI167149.1
Dviv_isotig10215
JI166473.1
Experimental_infoExpr_patternExpr1068794
Microarray_resultsGPL8303_CB6_WBGene00034554_A
GPL8303_CB6_WBGene00034554_B
GPL14143_CBG13868_176-235_0.891_28_A
GPL14143_CBG13868_733-792_0.922_9_C
GPL14143_CBG13868_821-880_0.911_18_B
MethodGene