WormBase Tree Display for Gene: WBGene00034309

WBGene00034309 SMap: S_parent: Sequence: cb25.fpc3052b
  Identity: Version: 3
    Name: CGC_name: Cbr-clec-172.2 From_analysis: Inferred_from_orthology
      Sequence_name: CBG13558
      Molecular_name: CBG13558
        CBG13558.1
        CBP17872
      Other_name: CBG_13558 Accession_evidence: NDB HE600980
        Cbr-clec-172 From_analysis: Inferred_from_orthology
      Public_name: Cbr-clec-172.2
    DB_info: Database: NDB locus_tag CBG_13558
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:03 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 21 Apr 2008 17:10:48 WBPerson2970 Name_change: CGC_name: Cbr-clec-172
        3 20 Mar 2018 10:26:13 WBPerson4025 Name_change: CGC_name: Cbr-clec-172.2
                Other_name: Cbr-clec-172
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    RNASeq_FPKM: WBls:0000002 18.0391 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        19.1303 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        20.2547 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        23.5946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        19.2453 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        19.3604 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        20.0311 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 0.352802 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        0.705605 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
            RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
        0.235202 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
      WBls:0000004 0 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        0.193577 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        0.386133 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        0.581752 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
      WBls:0000024 (12)
      WBls:0000027 0.914465 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        13.7117 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        4.87539 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        11.5296 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        31.4922 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        7.31308 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
      WBls:0000035 47.1321 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 25.296 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        25.6933 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        26.0905 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        32.1177 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        5.6078 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        71.4767 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 11.9185 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        13.4373 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        13.9553 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        14.1096 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        14.7819 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        15.6835 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        14.9538 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        15.1316 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        15.4814 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        18.4205 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
      WBls:0000063 17.7946 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        20.7891 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        22.0516 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        26.0685 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        38.0309 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        21.9936 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        24.06 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        28.0159 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 17.7946 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        18.4025 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        16.739 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        17.0371 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    Ortholog (20)
    Paralog (25)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; Lectin C-type domain; C-type lectin-like; and C-type lectin fold. Is an ortholog of C. elegans clec-172. In C. elegans, clec-172 is involved in defense response to Gram-positive bacterium. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG13558
    Corresponding_CDS_history: CBG13558:bp194
    Corresponding_transcript: CBG13558.1
  Experimental_info: Expr_pattern: Expr1069116
    Microarray_results: GPL8303_CB6_WBGene00034309_A
      GPL14143_CBG13558_249-308_0.908_15_C
      GPL14143_CBG13558_277-336_0.921_10_A
      GPL14143_CBG13558_359-418_0.956_3_B
  Method: Gene