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WormBase Tree Display for Gene: WBGene00032226

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Name Class

WBGene00032226SMapS_parentSequencecb25.fpc2397
IdentityVersion2
NameCGC_nameCbr-spp-2From_analysisInferred_from_orthology
Sequence_nameCBG11016
Molecular_nameCBG11016
CBG11016.1
CBP08691
Other_nameCBG_11016Accession_evidenceNDBHE601482
Public_nameCbr-spp-2
DB_infoDatabaseNDBlocus_tagCBG_11016
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:01WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-spp-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspp
RNASeq_FPKMWBls:0000002189.616From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
274.167From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
319.701From_analysisRNASeq.briggsae.WBls:0000002.control_mean
495.32From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1539.47From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
384.743From_analysisRNASeq.briggsae.WBls:0000002.control_median
624.643From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.145919From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.291837From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.097279From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:0000027127.714From_analysisRNASeq.briggsae.WBls:0000027.control_mean
253.243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
44.42From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
85.4781From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
122.08From_analysisRNASeq.briggsae.WBls:0000027.control_median
135.456From_analysisRNASeq.briggsae.WBls:0000027.control_mean
158.682From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035178.102From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038134.497From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
153.673From_analysisRNASeq.briggsae.WBls:0000038.control_median
172.848From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
217.835From_analysisRNASeq.briggsae.WBls:0000038.control_mean
466.293From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
97.7006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:0000041156.874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
158.814From_analysisRNASeq.briggsae.WBls:0000041.control_median
160.754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
231.703From_analysisRNASeq.briggsae.WBls:0000041.control_mean
518.914From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
90.2703From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
336.363From_analysisRNASeq.briggsae.WBls:0000041.control_median
341.926From_analysisRNASeq.briggsae.WBls:0000041.control_mean
511.973From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
612.769From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
54.6679From_analysisRNASeq.briggsae.WBls:0000063.control_mean
59.0262From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
60.0819From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
67.1922From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
87.0391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
58.5765From_analysisRNASeq.briggsae.WBls:0000063.control_mean
63.6371From_analysisRNASeq.briggsae.WBls:0000063.control_median
78.1198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:0000101136.195From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
90.2703From_analysisRNASeq.briggsae.total_over_all_stages.control_median
180.281From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
88.6547From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (22)
ParalogWBGene00032225Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032227Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00036987Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00036616Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040671Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040672Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00040673Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041616Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00270753Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Saposin B type, region 2; Saposin B type domain; Saposin-like type B, region 2; and Saposin-like. Is an ortholog of C. elegans spp-2. In C. elegans, spp-2 is involved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG11016
Corresponding_CDS_historyCBG11016:bp194
CBG11016:bp268
Corresponding_transcriptCBG11016.1
Other_sequenceFD515466.1
CSC00512_1
FD515127.1
CBC06526_1
FD516413.1
FD516016.1
CBC06526_2
Experimental_infoExpr_patternExpr1066372
Microarray_resultsGPL8303_CB6_WBGene00032226_A
GPL8303_CB6_WBGene00032226_B
GPL14143_CBG11016_94-153_0.930_1_A
MethodGene