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WormBase Tree Display for Gene: WBGene00029993

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Name Class

WBGene00029993SMapS_parentSequencecb25.fpc1402c
IdentityVersion3
NameCGC_nameCbr-ifc-2From_analysisInferred_from_orthology
Sequence_nameCBG08136
Molecular_nameCBG08136a
CBG08136a.1
CBP44364
CBG08136b
CBP45174
CBG08136c
CBP39953
CBG08136b.1
CBG08136c.1
Other_nameCBG_08136Accession_evidenceNDBHE600971
CBG_27390
Public_nameCbr-ifc-2
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:59WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:05WBPerson2970Name_changeCGC_nameCbr-ifc-2
331 Aug 2016 10:29:44WBPerson4025EventAcquires_mergeWBGene00088804
Acquires_mergeWBGene00088804
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classifc
AlleleWBVar00009807
RNASeq_FPKMWBls:000000263.6111From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
66.055From_analysisRNASeq.briggsae.WBls:0000002.control_mean
66.2518From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
68.3021From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
67.2769From_analysisRNASeq.briggsae.WBls:0000002.control_median
72.8768From_analysisRNASeq.briggsae.WBls:0000002.control_mean
93.3421From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.031872From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.867846From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.70382From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
1.09249From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.54179From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000043.82943From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
4.07915From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
4.32888From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.48406From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.52442From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.85747From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.12058From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002719.6566From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
22.8926From_analysisRNASeq.briggsae.WBls:0000027.control_mean
42.5127From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
6.50854From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
132.704From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
31.0847From_analysisRNASeq.briggsae.WBls:0000027.control_median
50.3455From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003595.8433From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038126.782From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
25.0766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
62.3981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
76.9846From_analysisRNASeq.briggsae.WBls:0000038.control_mean
78.04From_analysisRNASeq.briggsae.WBls:0000038.control_median
93.6819From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004134.4559From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
35.54From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
37.5787From_analysisRNASeq.briggsae.WBls:0000041.control_median
39.6174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
42.6204From_analysisRNASeq.briggsae.WBls:0000041.control_mean
60.8684From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
24.7899From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
41.5867From_analysisRNASeq.briggsae.WBls:0000041.control_mean
54.2483From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:0000063100.926From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
101.481From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
105.364From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
113.759From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
84.306From_analysisRNASeq.briggsae.WBls:0000063.control_mean
101.203From_analysisRNASeq.briggsae.WBls:0000063.control_median
67.343From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
81.4788From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010158.8075From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
60.8684From_analysisRNASeq.briggsae.total_over_all_stages.control_median
49.8401From_analysisRNASeq.briggsae.total_over_all_stages.control_median
55.0135From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (21)
Paralog (13)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Lamin tail domain superfamily; Intermediate filament protein; and Intermediate filament, rod domain. Is an ortholog of C. elegans ifc-2. In C. elegans, ifc-2 is involved in post-embryonic digestive tract morphogenesis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG08136a
CBG08136b
CBG08136c
Corresponding_CDS_historyCBG08136:bp194
CBG08136:bp255
Corresponding_transcriptCBG08136a.1
CBG08136b.1
CBG08136c.1
Other_sequence (21)
Experimental_infoExpr_patternExpr1062987
Expr1063169
Microarray_resultsGPL8303_CB6_WBGene00029993_A
GPL8303_CB6_WBGene00029993_B
GPL14143_CBG08136_2712-2771_0.728_173_C
GPL14143_CBG08136_2924-2983_0.806_11_A
GPL14143_CBG08136_3124-3183_0.812_3_B
GPL14143_CBG27390_151-210_0.833_7_A
MethodGene