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WormBase Tree Display for Gene: WBGene00028585

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Name Class

WBGene00028585SMapS_parentSequencecb25.fpc0156
IdentityVersion2
NameCGC_nameCbr-irg-1From_analysisInferred_from_orthology
Sequence_nameCBG06284
Molecular_nameCBG06284a
CBG06284a.1
CBP07457
CBG06284b
CBP47273
CBG06284b.1
Other_nameCBG_06284Accession_evidenceNDBHE601320
Public_nameCbr-irg-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
213 Jul 2009 14:56:08WBPerson9133Name_changeCGC_nameCbr-irg-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classirg
RNASeq_FPKMWBls:000000212.7288From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
5.34974From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
5.8675From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
7.98201From_analysisRNASeq.briggsae.WBls:0000002.control_mean
5.88859From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.90968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
7.46393From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.174177From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.348354From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.116118From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.482566From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.965132From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
0.592291From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.626962From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.800137From_analysisRNASeq.briggsae.WBls:0000004.control_mean
1.8163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.191002From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
13.9359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.80606From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
5.31099From_analysisRNASeq.briggsae.WBls:0000027.control_mean
10.1812From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
5.99363From_analysisRNASeq.briggsae.WBls:0000027.control_median
6.52854From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000352.84459From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.291552From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
11.3874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.9567From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
7.08985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
9.23862From_analysisRNASeq.briggsae.WBls:0000038.control_median
9.43137From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000416.18198From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
6.41663From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.53951From_analysisRNASeq.briggsae.WBls:0000041.control_median
6.66238From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
6.6929From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.51063From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
5.30186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
6.59214From_analysisRNASeq.briggsae.WBls:0000041.control_mean
7.47938From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006310.5479From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.80537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
6.34077From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.67436From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
8.67622From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.48405From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.93741From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.20045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001015.9339From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
6.00666From_analysisRNASeq.briggsae.total_over_all_stages.control_median
5.55766From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.9514From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Ortholog (34)
ParalogWBGene00030797Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00034009Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037681Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039519Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041354Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042085Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00271426Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: NADAR domain; NADAR; and YbiA-like superfamily. Is an ortholog of C. elegans irg-1. In C. elegans, irg-1 is involved in antibacterial innate immune response and defense response to Gram-negative bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06284a
CBG06284b
Corresponding_CDS_historyCBG06284:bp194
CBG06284:bp255
Corresponding_transcriptCBG06284a.1
CBG06284b.1
Experimental_infoExpr_patternExpr1052220
Microarray_resultsGPL8303_CB6_WBGene00028585_A
GPL8303_CB6_WBGene00028585_B
GPL14143_CBG06284_68-127_0.857_19_B
GPL14143_CBG06284_375-434_0.966_1_A
GPL14143_CBG06284_408-467_0.640_56_C
MethodGene