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WormBase Tree Display for Gene: WBGene00028443

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Name Class

WBGene00028443SMapS_parentSequencecb25.fpc0143b
IdentityVersion5
NameCGC_nameCbr-lys-5From_analysisInferred_from_orthology
Sequence_nameCBG06114
Molecular_nameCBG06114
CBG06114.1
CBP21696
Other_nameCBG_06114Accession_evidenceNDBHE600986
Public_nameCBG06114
DB_infoDatabaseNDBlocus_tagCBG_06114
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:58WBPerson1971EventImportedInitial conversion from brigace
224 May 2007 11:22:38WBPerson2970Name_changeCGC_nameCbr-lys-6.2
320 Mar 2018 10:26:13WBPerson4025Name_changeCGC_nameRemoved
401 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameCbr-lys-5
504 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameCbr-lys-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlys
RNASeq_FPKMWBls:000000212.1516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
14.5789From_analysisRNASeq.briggsae.WBls:0000002.control_mean
15.482From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
16.1032From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
13.0195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
14.1891From_analysisRNASeq.briggsae.WBls:0000002.control_mean
14.2507From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000040From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.083151From_analysisRNASeq.briggsae.WBls:0000004.control_mean
0.415754From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.741052From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.4387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
1.45603From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
4.87859From_analysisRNASeq.briggsae.WBls:0000027.control_mean
22.3988From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
6.94736From_analysisRNASeq.briggsae.WBls:0000027.control_median
9.25865From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:000003526.351From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.0916From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
18.5085From_analysisRNASeq.briggsae.WBls:0000038.control_mean
20.6614From_analysisRNASeq.briggsae.WBls:0000038.control_median
26.2313From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
29.7042From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.00689From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:000004110.3039From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
13.6742From_analysisRNASeq.briggsae.WBls:0000041.control_mean
33.6145From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
3.86549From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
6.91275From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
8.60833From_analysisRNASeq.briggsae.WBls:0000041.control_median
15.4441From_analysisRNASeq.briggsae.WBls:0000041.control_mean
28.9095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
9.05825From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
9.68108From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:000006310.2449From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
5.50285From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
6.37718From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
6.41588From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
7.2316From_analysisRNASeq.briggsae.WBls:0000063.control_mean
7.61721From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
11.4573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
7.01654From_analysisRNASeq.briggsae.WBls:0000063.control_median
7.93589From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:000010112.4893From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.8674From_analysisRNASeq.briggsae.total_over_all_stages.control_median
11.775From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
9.46282From_analysisRNASeq.briggsae.total_over_all_stages.control_median
GO_annotation00131950
00131951
00131952
Ortholog (48)
ParalogWBGene00028441Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00028442Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00025498Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031133Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031134Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00031135Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable lysozyme activity. Predicted to be involved in cell wall macromolecule catabolic process and peptidoglycan catabolic process. Is an ortholog of C. elegans lys-5. In C. elegans, lys-5 is involved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG06114
Corresponding_CDS_historyCBG06114:bp194
Corresponding_transcriptCBG06114.1
Other_sequence (102)
Experimental_infoExpr_patternExpr1050549
Microarray_resultsGPL8303_CB6_WBGene00028443_A
GPL14143_CBG06114_27-86_0.895_35_C
GPL14143_CBG06114_490-549_0.949_6_B
GPL14143_CBG06114_577-636_0.966_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
Remark[180319 gw3] The CGC name Cbr-lys-6.2 was deleted as there was no evidence to support it.Curator_confirmedWBPerson4025
[200204 pad] The CGC name Cbr-lys-5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene