WormBase Tree Display for Gene: WBGene00028439

WBGene00028439 SMap: S_parent: Sequence: cb25.fpc0143b
  Identity: Version: 3
    Name: CGC_name: Cbr-mars-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG06108
      Molecular_name: CBG06108
        CBG06108.1
        CBP01530
      Other_name: Cbr-mrs-1 From_analysis: Inferred_from_orthology
        CBG_06108 Accession_evidence: NDB HE600986
      Public_name: Cbr-mars-1
    DB_info: Database: NDB locus_tag CBG_06108
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:58 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-mrs-1
        3 29 Jan 2010 10:38:19 WBPerson2970 Name_change: CGC_name: Cbr-mars-1
                Other_name: Cbr-mrs-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: mars
    RNASeq_FPKM: WBls:0000002 51.5629 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        51.688 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        52.2669 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        53.5497 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        41.1639 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        49.4911 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        51.6255 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 42.8131 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        47.1309 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        51.4487 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        49.0734 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        52.9585 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 32.27 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        33.3899 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        34.5097 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        32.875 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        33.1767 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        33.7581 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        35.9592 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 (12)
      WBls:0000027 11.1249 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        20.6756 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        3.08984 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        47.8121 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        24.9432 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        25.1971 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        38.7615 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 46.7565 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 24.2413 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        44.4736 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        45.583 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        47.2831 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        50.0925 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        63.5246 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 58.4681 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        76.8142 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        80.5325 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        81.9708 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        83.4092 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        84.8472 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        63.5908 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        72.4175 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        73.8775 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        76.475 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 101.393 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        53.2337 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        54.6277 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        58.6576 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        60.8113 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        65.7447 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        58.6695 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        58.6814 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
        64.5675 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
      WBls:0000101 49.2903 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        51.4487 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        48.9211 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        50.7706 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00131935
      00131936
      00131937
      00131938
      00131939
      00131940
      00131941
    Ortholog (34)
    Paralog: WBGene00029903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032507 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032918 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033207 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039214 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042023 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270397 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity; methionine-tRNA ligase activity; and tRNA binding activity. Predicted to be involved in methionyl-tRNA aminoacylation. Is an ortholog of C. elegans mars-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG06108
    Corresponding_CDS_history: CBG06108:bp194
    Corresponding_transcript: CBG06108.1
    Other_sequence (129)
  Experimental_info: Expr_pattern: Expr1056101
    Microarray_results: GPL8303_CB6_WBGene00028439_A
      GPL8303_CB6_WBGene00028439_B
      GPL14143_CBG06108_1512-1571_0.811_96_C
      GPL14143_CBG06108_1622-1681_0.720_284_A
      GPL14143_CBG06108_1663-1722_0.880_40_B
  Method: Gene