WormBase Tree Display for Gene: WBGene00032507

WBGene00032507 SMap: S_parent: Sequence: cb25.fpc2454b
  Identity: Version: 3
    Name: CGC_name: Cbr-vars-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG11384
      Molecular_name: CBG11384
        CBG11384.1
        CBP46053
      Other_name: Cbr-vrs-1 From_analysis: Inferred_from_orthology
        CBG_11384 Accession_evidence: NDB HE600908
      Public_name: Cbr-vars-1
    DB_info: Database: NDB locus_tag CBG_11384
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:52:02 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Sep 2007 17:07:04 WBPerson2970 Name_change: CGC_name: Cbr-vrs-1
        3 29 Jan 2010 10:38:19 WBPerson2970 Name_change: CGC_name: Cbr-vars-1
                Other_name: Cbr-vrs-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vars
    Allele: WBVar00013017
      WBVar00013012
    RNASeq_FPKM: WBls:0000002 13.2351 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        13.4415 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        13.4689 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        13.6204 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        11.5123 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        12.9592 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        13.352 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
      WBls:0000003 12.153 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        13.3685 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        14.5839 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
        13.6177 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        14.1163 From_analysis: RNASeq.briggsae.WBls:0000003.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 13.745 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        15.5478 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        17.3505 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        14.2599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        14.5664 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        14.8209 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
        14.9485 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
      WBls:0000024 (12)
      WBls:0000027 0.830302 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
        14.5429 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
        2.68162 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
        6.01827 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
        11.6948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
        7.18821 From_analysis: RNASeq.briggsae.WBls:0000027.control_median
        7.43741 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
      WBls:0000035 11.6141 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 11.633 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        13.7469 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        14.0784 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        15.8607 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        25.0262 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
        3.79379 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
      WBls:0000041 16.673 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        18.4297 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        18.6603 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        18.8909 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        19.4845 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        9.88709 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        10.2742 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        11.0817 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        14.6747 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        14.7557 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 11.7526 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        13.9254 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
        14.2675 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        14.5321 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
        16.038 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        12.1848 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        14.3068 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        14.346 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 12.3718 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        13.6204 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        12.512 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        13.6827 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
    GO_annotation: 00135911
      00135912
      00135913
      00135914
      00135915
      00135916
      00135917
    Contained_in_operon: CBOPA0846
    Ortholog (28)
    Paralog: WBGene00028439 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00029903 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00032918 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00033207 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00039214 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00042023 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00270397 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity; aminoacyl-tRNA editing activity; and valine-tRNA ligase activity. Predicted to be involved in valyl-tRNA aminoacylation. Is an ortholog of C. elegans vars-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG11384
    Corresponding_CDS_history: CBG11384:bp194
      CBG11384:bp255
    Corresponding_transcript: CBG11384.1
    Other_sequence (15)
  Experimental_info: Expr_pattern: Expr1058765
    Microarray_results: GPL8303_CB6_WBGene00032507_A
      GPL8303_CB6_WBGene00032507_B
      GPL14143_CBG11384_2452-2511_0.876_30_C
      GPL14143_CBG11384_2755-2814_0.933_1_B
      GPL14143_CBG11384_2931-2990_0.932_2_A
  Method: Gene