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WormBase Tree Display for Gene: WBGene00027431

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Name Class

WBGene00027431SMapS_parentSequencecb25.fpc0090
IdentityVersion3
NameSequence_nameCBG04827
Molecular_nameCBG04827
CBG04827.1
CBP47819
Other_nameCBG_04827Accession_evidenceNDBHE601135
Public_nameCBG04827
DB_infoDatabaseNDBlocus_tagCBG_04827
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:57WBPerson1971EventImportedInitial conversion from brigace
224 Jul 2008 11:56:42WBPerson1847EventAcquires_mergeWBGene00027430
312 Jan 2017 16:33:20WBPerson4025EventSplit_intoWBGene00271438
Acquires_mergeWBGene00027430
Split_intoWBGene00271438
StatusLive
Gene_infoBiotypeSO:0001217
Allele (12)
RNASeq_FPKMWBls:0000002152.17From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
158.92From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
193.6From_analysisRNASeq.briggsae.WBls:0000002.control_mean
269.711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
214.316From_analysisRNASeq.briggsae.WBls:0000002.control_median
220.914From_analysisRNASeq.briggsae.WBls:0000002.control_mean
302.856From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003402.706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
425.515From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
448.324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
316.811From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
389.28From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000416.447From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
18.5811From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
20.7151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
RNASeq.briggsae.WBls:0000004.control_median
20.0687From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
20.5269From_analysisRNASeq.briggsae.WBls:0000004.control_mean
21.7128From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
23.6911From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002710.0694From_analysisRNASeq.briggsae.WBls:0000027.control_mean
11.1736From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.6843From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.3502From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
12.429From_analysisRNASeq.briggsae.WBls:0000027.control_median
26.356From_analysisRNASeq.briggsae.WBls:0000027.control_mean
75.2159From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003568.666From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038137.072From_analysisRNASeq.briggsae.WBls:0000038.control_median
213.103From_analysisRNASeq.briggsae.WBls:0000038.control_mean
229.057From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
26.2892From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
45.087From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
551.977From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
WBls:0000041198.163From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
226.807From_analysisRNASeq.briggsae.WBls:0000041.control_mean
227.806From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
228.029From_analysisRNASeq.briggsae.WBls:0000041.control_median
228.253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
253.006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
240.63From_analysisRNASeq.briggsae.WBls:0000041.control_median
349.935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
361.244From_analysisRNASeq.briggsae.WBls:0000041.control_mean
910.3From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006319.091From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
20.6743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
22.7554From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.9766From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
26.0489From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
24.366From_analysisRNASeq.briggsae.WBls:0000063.control_median
284.543From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
63.333From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:0000101124.66From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
45.087From_analysisRNASeq.briggsae.total_over_all_stages.control_median
155.797From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
67.1734From_analysisRNASeq.briggsae.total_over_all_stages.control_median
Contained_in_operonCBOPA0099
Ortholog (16)
ParalogWBGene00027401Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00026320Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00027418Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Late embryogenesis abundant protein and Late embryogenesis abundant protein, LEA_4 subgroup. Is an ortholog of C. elegans lea-1. In C. elegans, lea-1 is involved in hyperosmotic response; response to desiccation; and response to heat.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04827
Corresponding_CDS_historyCBG04827:bp194
CBG04827:bp257
Corresponding_transcriptCBG04827.1
Other_sequenceCGC00345_1
Experimental_infoExpr_patternExpr1070066
Microarray_resultsGPL8303_CB6_WBGene00027431_A
GPL8303_CB6_WBGene00027431_B
GPL14143_CBG04827_1052-1111_0.954_1_A
Expression_clusterWBPaper00059178:Cbr-spr-4(gu163)_upregulated
MethodGene