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WormBase Tree Display for Gene: WBGene00027217

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Name Class

WBGene00027217SMapS_parentSequencecb25.fpc0090
IdentityVersion2
NameCGC_nameCbr-ccnk-1From_analysisInferred_from_orthology
Sequence_nameCBG04574
Molecular_nameCBG04574
CBG04574.1
CBP06878
Other_nameCBG_04574Accession_evidenceNDBHE601135
Public_nameCbr-ccnk-1
DB_infoDatabaseNDBlocus_tagCBG_04574
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-ccnk-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classccnk
RNASeq_FPKMWBls:000000232.5836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
39.7005From_analysisRNASeq.briggsae.WBls:0000002.control_mean
42.4566From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
44.0612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
43.2589From_analysisRNASeq.briggsae.WBls:0000002.control_median
44.556From_analysisRNASeq.briggsae.WBls:0000002.control_mean
59.1224From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:0000003142.48From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
145.503From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
148.527From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
153.417From_analysisRNASeq.briggsae.WBls:0000003.control_mean
169.243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:0000004124.612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
130.462From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
136.313From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
127.298From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
132.431From_analysisRNASeq.briggsae.WBls:0000004.control_mean
132.954From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
140.98From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.1691From_analysisRNASeq.briggsae.WBls:0000027.control_mean
2.98719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
30.6232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
5.89679From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
13.3156From_analysisRNASeq.briggsae.WBls:0000027.control_median
15.0604From_analysisRNASeq.briggsae.WBls:0000027.control_mean
20.7344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003522.2516From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003815.0019From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
16.6732From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
19.733From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.5554From_analysisRNASeq.briggsae.WBls:0000038.control_mean
22.7928From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
35.7537From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004150.4197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
61.8241From_analysisRNASeq.briggsae.WBls:0000041.control_mean
65.0756From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
65.3815From_analysisRNASeq.briggsae.WBls:0000041.control_median
65.6874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
66.1136From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
61.2972From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
61.893From_analysisRNASeq.briggsae.WBls:0000041.control_mean
62.7644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
63.92From_analysisRNASeq.briggsae.WBls:0000041.control_median
WBls:00000630From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
26.3858From_analysisRNASeq.briggsae.WBls:0000063.control_mean
30.0114From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
30.4722From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
35.2586From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
36.1866From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
27.4183From_analysisRNASeq.briggsae.WBls:0000063.control_mean
31.5265From_analysisRNASeq.briggsae.WBls:0000063.control_median
32.5808From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010135.2586From_analysisRNASeq.briggsae.total_over_all_stages.control_median
46.164From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
37.058From_analysisRNASeq.briggsae.total_over_all_stages.control_median
56.4666From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130834
00130835
Ortholog (29)
ParalogWBGene00035815Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037307Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041404Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041405Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041718Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable cyclin-dependent protein serine/threonine kinase regulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is an ortholog of C. elegans ccnk-1. In C. elegans, ccnk-1 is involved in nematode larval development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04574
Corresponding_CDS_historyCBG04574:bp194
Corresponding_transcriptCBG04574.1
Other_sequence (39)
Experimental_infoExpr_patternExpr1065383
Microarray_resultsGPL8303_CB6_WBGene00027217_A
GPL8303_CB6_WBGene00027217_B
GPL8303_CB6_WBGene00027217_C
GPL14143_CBG04574_405-464_0.801_64_B
GPL14143_CBG04574_513-572_0.961_4_A
GPL14143_CBG04574_599-658_0.862_35_C
MethodGene