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WormBase Tree Display for Gene: WBGene00027146

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Name Class

WBGene00027146SMapS_parentSequencecb25.fpc0083
IdentityVersion3
NameCGC_nameCbr-vab-3From_analysisInferred_from_orthology
Sequence_nameCBG04483
Molecular_nameCBG04483a
CBG04483a.1
CBP40265
CBG04483b
CBP42279
CBG04483b.1
Other_nameCBG_04483Accession_evidenceNDBHE601277
CBG_04481
Public_nameCbr-vab-3
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
215 Oct 2007 15:19:45WBPerson2970Name_changeCGC_nameCbr-vab-3
331 Aug 2016 10:29:45WBPerson4025EventAcquires_mergeWBGene00027145
Acquires_mergeWBGene00027145
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvab
RNASeq_FPKMWBls:000000210.7353From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.37641From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
6.62884From_analysisRNASeq.briggsae.WBls:0000002.control_mean
6.7748From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.70223From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.5756From_analysisRNASeq.briggsae.WBls:0000002.control_median
5.39718From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:000000310.2578From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
12.2823From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
8.23337From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
5.88697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
8.80088From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000427.3351From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
28.0667From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
28.7983From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
28.7895From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
31.5898From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
32.066From_analysisRNASeq.briggsae.WBls:0000004.control_mean
43.8172From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.5155From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
2.79707From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
6.11774From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
7.47677From_analysisRNASeq.briggsae.WBls:0000027.control_mean
14.3296From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
9.18998From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.81662From_analysisRNASeq.briggsae.WBls:0000027.control_median
WBls:000003511.1957From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003811.2957From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.66215From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
17.076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
2.45874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.87722From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.12315From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:00000411.00831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
1.04078From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.14929From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.25781From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.60478From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.11221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.14281From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.25465From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.0278From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000630.727846From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.847415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.885From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.924949From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.981865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.904975From_analysisRNASeq.briggsae.WBls:0000063.control_median
1.05971From_analysisRNASeq.briggsae.WBls:0000063.control_mean
2.71901From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001016.03493From_analysisRNASeq.briggsae.total_over_all_stages.control_median
8.25542From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
5.96095From_analysisRNASeq.briggsae.total_over_all_stages.control_median
9.87764From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130753
00130754
Ortholog (32)
Paralog (20)
Structured_descriptionAutomated_descriptionPredicted to enable DNA binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans vab-3. In C. elegans, vab-3 is involved in several processes, including male anatomical structure morphogenesis; negative regulation of distal tip cell migration; and positive regulation of glial cell differentiation.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04483a
CBG04483b
Corresponding_CDS_historyCBG04483:bp194
CBG04483:bp255
Corresponding_transcriptCBG04483a.1
CBG04483b.1
Other_sequence (64)
Experimental_infoExpr_patternExpr1054642
Expr1069802
Microarray_resultsGPL8303_CB6_WBGene00027146_A
GPL14143_CBG04481_155-214_0.804_14_C
GPL14143_CBG04481_315-374_0.843_8_B
GPL14143_CBG04481_612-671_0.884_1_A
GPL14143_CBG04483_799-858_0.880_2_B
GPL14143_CBG04483_813-872_0.870_3_C
GPL14143_CBG04483_824-883_0.892_1_A
MethodGene