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WormBase Tree Display for Gene: WBGene00025623

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Name Class

WBGene00025623SMapS_parentSequencecb25.fpc0058
IdentityVersion3
NameCGC_nameCbr-tat-4From_analysisInferred_from_orthology
Sequence_nameCBG02601
Molecular_nameCBG02601
CBG02601.1
CBP39367
Other_nameCBG_02601Accession_evidenceNDBHE601438
Cbr-tat-4.1From_analysisInferred_from_orthology
Public_nameCbr-tat-4
DB_infoDatabaseNDBlocus_tagCBG_02601
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:55WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-tat-4.1
320 Mar 2018 10:26:11WBPerson4025Name_changeCGC_nameCbr-tat-4
Other_nameCbr-tat-4.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classtat
AlleleWBVar00107548
WBVar00107549
WBVar00107550
RNASeq_FPKMWBls:000000210.5855From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.8311From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.83243From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.08301From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.9794From_analysisRNASeq.briggsae.WBls:0000002.control_median
3.12638From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
4.59385From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.460724From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
0.880417From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
1.30011From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
1.07581From_analysisRNASeq.briggsae.WBls:0000003.control_mean
1.46659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:00000042.84481From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
3.21282From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
3.58082From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
3.06545From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.18887From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.21634From_analysisRNASeq.briggsae.WBls:0000004.control_mean
3.40174From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.311104From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.22205From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.06759From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.66962From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
4.44584From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.48229From_analysisRNASeq.briggsae.WBls:0000027.control_mean
8.7264From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000354.88005From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000381.07504From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
11.5659From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
4.535From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
6.49318From_analysisRNASeq.briggsae.WBls:0000038.control_mean
6.66589From_analysisRNASeq.briggsae.WBls:0000038.control_median
8.79679From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000411.5836From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
1.76342From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
1.78128From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.79913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
2.27136From_analysisRNASeq.briggsae.WBls:0000041.control_mean
3.93929From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
2.86921From_analysisRNASeq.briggsae.WBls:0000041.control_median
2.88394From_analysisRNASeq.briggsae.WBls:0000041.control_mean
4.09185From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
4.12633From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:00000632.72573From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
2.93882From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
3.18394From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
3.21921From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
3.77169From_analysisRNASeq.briggsae.WBls:0000063.control_mean
6.79075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.237From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
3.06138From_analysisRNASeq.briggsae.WBls:0000063.control_median
3.51591From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001013.18394From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.13686From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
3.1864From_analysisRNASeq.briggsae.total_over_all_stages.control_median
4.03683From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00129040
00129041
00129042
00129043
00129044
00129045
00129046
00129047
Contained_in_operonCBOPA0608
Ortholog (43)
ParalogWBGene00037766Caenorhabditis briggsaeFrom_analysisInparanoid_8
WormBase-Compara
WBGene00032754Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032829Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00036728Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable ATP hydrolysis activity; ATPase-coupled intramembrane lipid transporter activity; and ion binding activity. Predicted to be involved in phospholipid transport. Predicted to be located in membrane. Is an ortholog of C. elegans tat-4. In C. elegans, tat-4 is involved in sterol metabolic process.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG02601
Corresponding_CDS_historyCBG02601:bp194
CBG02601:bp255
Corresponding_transcriptCBG02601.1
Other_sequenceJI166522.1
EX541148.1
Oden_isotig23039
ACC16333_1
ACC14818_1
EX553620.1
Experimental_infoExpr_patternExpr1055981
Microarray_resultsGPL8303_CB6_WBGene00025623_A
GPL8303_CB6_WBGene00025623_B
GPL14143_CBG02601_2580-2639_0.791_23_C
GPL14143_CBG02601_2864-2923_0.779_50_A
GPL14143_CBG02601_2990-3049_0.779_49_B
MethodGene