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WormBase Tree Display for Gene: WBGene00023849

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Name Class

WBGene00023849SMapS_parentSequencecb25.fpc0010a
IdentityVersion2
NameCGC_nameCbr-pck-1From_analysisInferred_from_orthology
Sequence_nameCBG00466
Molecular_nameCBG00466
CBG00466.1
CBP37872
Other_nameCBG_00466Accession_evidenceNDBHE600978
Public_nameCbr-pck-1
DB_infoDatabaseNDBlocus_tagCBG_00466
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:53WBPerson1971EventImportedInitial conversion from brigace
220 Mar 2018 10:26:10WBPerson4025Name_changeCGC_nameCbr-pck-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpck
AlleleWBVar00003089
WBVar00062658
WBVar00030159
WBVar00003074
WBVar00062663
WBVar00003079
WBVar00062668
WBVar00003084
WBVar00030154
RNASeq_FPKMWBls:0000002101.719From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
132.615From_analysisRNASeq.briggsae.WBls:0000002.control_mean
132.882From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
163.243From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
107.666From_analysisRNASeq.briggsae.WBls:0000002.control_mean
117.3From_analysisRNASeq.briggsae.WBls:0000002.control_median
32.8211From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:00000030.585861From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
10.8651From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
21.1443From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
15.0832From_analysisRNASeq.briggsae.WBls:0000003.control_mean
23.5195From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000477.8464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
80.1From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
82.3536From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
70.7489From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
81.2007From_analysisRNASeq.briggsae.WBls:0000004.control_mean
85.8653From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
89.1891From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002717.4312From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
48.5258From_analysisRNASeq.briggsae.WBls:0000027.control_mean
51.6621From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
76.4842From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
53.1076From_analysisRNASeq.briggsae.WBls:0000027.control_mean
59.2575From_analysisRNASeq.briggsae.WBls:0000027.control_median
66.8529From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003565.1194From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038181.435From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
56.3803From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
62.464From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
78.8997From_analysisRNASeq.briggsae.WBls:0000038.control_median
95.3355From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
98.9037From_analysisRNASeq.briggsae.WBls:0000038.control_mean
WBls:0000041106.227From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
109.099From_analysisRNASeq.briggsae.WBls:0000041.control_mean
177.927From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
73.577From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
78.6636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
92.4453From_analysisRNASeq.briggsae.WBls:0000041.control_median
142.077From_analysisRNASeq.briggsae.WBls:0000041.control_median
145.875From_analysisRNASeq.briggsae.WBls:0000041.control_mean
193.465From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
245.391From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006336.4634From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
39.7771From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
39.8279From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
44.0235From_analysisRNASeq.briggsae.WBls:0000063.control_mean
45.6446From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
58.4047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
42.7363From_analysisRNASeq.briggsae.WBls:0000063.control_median
46.2518From_analysisRNASeq.briggsae.WBls:0000063.control_mean
57.3932From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010176.4842From_analysisRNASeq.briggsae.total_over_all_stages.control_median
96.7631From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
75.0306From_analysisRNASeq.briggsae.total_over_all_stages.control_median
96.6152From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00127206
00127207
00127208
00127209
Ortholog (30)
ParalogWBGene00028947Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00030101Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable GTP binding activity and phosphoenolpyruvate carboxykinase activity. Predicted to be involved in gluconeogenesis. Is an ortholog of C. elegans pck-1.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG00466
Corresponding_CDS_historyCBG00466:bp224
Corresponding_transcriptCBG00466.1
Other_sequence (193)
Experimental_infoExpr_patternExpr1062549
Microarray_resultsGPL8303_CB6_WBGene00023849_A
GPL8303_CB6_WBGene00023849_B
GPL14143_CBG00466_1056-1115_0.894_16_C
GPL14143_CBG00466_1318-1377_0.695_147_A
GPL14143_CBG00466_1511-1570_0.940_2_B
Expression_clusterWBPaper00051425:CB_L4_vs_embryo_upregulated
MethodGene