WormBase Tree Display for Gene: WBGene00022759
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WBGene00022759 | SMap | S_parent | Sequence | ZK546 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | ZK546.2 | |||||||
Molecular_name | ZK546.2a | ||||||||
ZK546.2a.1 | |||||||||
CE36076 | |||||||||
ZK546.2b | |||||||||
CE43764 | |||||||||
ZK546.2b.1 | |||||||||
ZK546.2b.2 | |||||||||
ZK546.2c | |||||||||
Other_name | CELE_ZK546.2 | Accession_evidence | NDB | BX284602 | |||||
Public_name | ZK546.2 | ||||||||
DB_info | Database | AceView | gene | 2F237 | |||||
WormQTL | gene | WBGene00022759 | |||||||
WormFlux | gene | WBGene00022759 | |||||||
NDB | locus_tag | CELE_ZK546.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00022759|UniProtKB=Q23526 | |||||||
family | PTHR48051 | ||||||||
NCBI | gene | 173855 | |||||||
RefSeq | protein | NR_151581.1 | |||||||
NM_170985.5 | |||||||||
NM_001393057.1 | |||||||||
TrEMBL | UniProtAcc | Q23526 | |||||||
Q95PW8 | |||||||||
UniProt_GCRP | UniProtAcc | Q23526 | |||||||
RNAcentral | URSid | URS0000CBFF7A | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (37) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOP2690 | ||||||||
Ortholog (26) | |||||||||
Paralog | WBGene00003068 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00002632 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00004929 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00009647 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00015779 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00021533 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Enriched in several structures, including ADE sheath cell; PLM; anterior ganglion; germ line; and intestine based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; daf-12; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by seven chemicals including Zidovudine; paraquat; and Hydrolyzable Tannins based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; Leucine Rich Repeat; Leucine-rich repeat; Leucine-rich repeat domain superfamily; and Leucine rich repeat. Is an ortholog of human LRRC57 (leucine rich repeat containing 57). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS (2) | ||||||||
Corresponding_CDS_history (3) | |||||||||
Corresponding_transcript | ZK546.2c | ||||||||
ZK546.2a.1 | |||||||||
ZK546.2b.1 | |||||||||
ZK546.2b.2 | |||||||||
Other_sequence (20) | |||||||||
Associated_feature | WBsf644147 | ||||||||
WBsf644148 | |||||||||
WBsf644149 | |||||||||
WBsf644150 | |||||||||
WBsf644151 | |||||||||
WBsf657548 | |||||||||
WBsf987748 | |||||||||
WBsf221206 | |||||||||
Experimental_info | RNAi_result | WBRNAi00022052 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059506 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00022053 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00001102 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038332 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00061964 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00095828 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00062490 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1026776 | ||||||||
Expr1040062 | |||||||||
Expr1162922 | |||||||||
Expr2008869 | |||||||||
Expr2027102 | |||||||||
Drives_construct | WBCnstr00023997 | ||||||||
Construct_product | WBCnstr00023997 | ||||||||
Microarray_results (37) | |||||||||
Expression_cluster (108) | |||||||||
Interaction | WBInteraction000197445 | ||||||||
WBInteraction000280346 | |||||||||
WBInteraction000313845 | |||||||||
WBInteraction000367173 | |||||||||
WBInteraction000576468 | |||||||||
Map_info | Positive | Positive_clone | ZK546 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | II | -2.73082 | |||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00041771 | |||||||||
WBPaper00055090 | |||||||||
Method | Gene |