WormBase Tree Display for Gene: WBGene00022717
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| WBGene00022717 | SMap | S_parent | Sequence | ZK370 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | hipr-1 | Person_evidence | WBPerson441 | |||||
| Sequence_name | ZK370.3 | ||||||||
| Molecular_name | ZK370.3a | ||||||||
| ZK370.3a.1 | |||||||||
| CE00540 | |||||||||
| ZK370.3b | |||||||||
| CE29640 | |||||||||
| ZK370.3b.1 | |||||||||
| ZK370.3b.2 | |||||||||
| Other_name | hip-1 | Paper_evidence | WBPaper00005786 | ||||||
| CELE_ZK370.3 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | hipr-1 | ||||||||
| DB_info | Database | AceView | gene | 3J813 | |||||
| WormQTL | gene | WBGene00022717 | |||||||
| WormFlux | gene | WBGene00022717 | |||||||
| NDB | locus_tag | CELE_ZK370.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00022717|UniProtKB=Q02328 | |||||||
| family | PTHR10407 | ||||||||
| NCBI | gene | 176224 | |||||||
| RefSeq | protein | NM_001392161.1 | |||||||
| NM_171215.8 | |||||||||
| SwissProt | UniProtAcc | Q02328 | |||||||
| TREEFAM | TREEFAM_ID | TF316860 | |||||||
| UniProt_GCRP | UniProtAcc | Q02328 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:06 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 15 Nov 2007 11:33:13 | WBPerson2970 | Name_change | CGC_name | hipr-1 | ||||
| 3 | 08 Aug 2014 15:58:29 | WBPerson2970 | Name_change | Other_name | hip-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hipr | ||||||||
| Allele (74) | |||||||||
| Strain | WBStrain00002894 | ||||||||
| WBStrain00031806 | |||||||||
| WBStrain00055668 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Contained_in_operon | CEOP3538 | ||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00006484 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00014864 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | hipr-1 encodes the C. elegans ortholog of mammalian Huntingtin-interacting protein 1-related (Hip1r) and Saccharomyces cerevisiae Sla2p; by homology, HIPR-1 is predicted to function as an actin-clathrin coupling protein; in C. elegans, hipr-1 has been shown to play a role in regulation of cholinergic neurotransmission at the neuromuscular junction and SNB-1 (synaptobrevin) abundance along the ventral nerve cord; an hipr-1 reporter fusion (published as an hip-1 reporter fusion) is expressed in the germline, gonad, pharynx, and several neurons that extend axons along the dorsal and ventral nerve cords. | Paper_evidence | WBPaper00004883 | |||||
| WBPaper00031088 | |||||||||
| WBPaper00005786 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Aug 2014 00:00:00 | ||||||||
| Automated_description | Predicted to enable actin filament binding activity; anion binding activity; and clathrin binding activity. Involved in several processes, including cellular localization; defecation; and ultradian rhythm. Predicted to be located in clathrin-coated vesicle. Expressed in germ line; gonad; neurons; and pharynx. Is an ortholog of human HIP1 (huntingtin interacting protein 1) and HIP1R (huntingtin interacting protein 1 related). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZK370.3a | |||||||
| ZK370.3b | |||||||||
| Corresponding_transcript | ZK370.3a.1 | ||||||||
| ZK370.3b.1 | |||||||||
| ZK370.3b.2 | |||||||||
| Other_sequence (57) | |||||||||
| Associated_feature | WBsf717091 | ||||||||
| WBsf717953 | |||||||||
| WBsf225464 | |||||||||
| WBsf225465 | |||||||||
| Experimental_info | RNAi_result (12) | ||||||||
| Expr_pattern | Chronogram947 | ||||||||
| Expr2372 | |||||||||
| Expr1011416 | |||||||||
| Expr1040042 | |||||||||
| Expr1162805 | |||||||||
| Expr2012437 | |||||||||
| Expr2030673 | |||||||||
| Drives_construct | WBCnstr00003411 | ||||||||
| WBCnstr00010795 | |||||||||
| WBCnstr00024030 | |||||||||
| Construct_product | WBCnstr00010795 | ||||||||
| WBCnstr00024030 | |||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (126) | |||||||||
| Map_info | Map | III | Position | -0.085974 | Error | 0.002243 | |||
| Positive | Positive_clone | ZK370 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| This publication refers to ZK370.3 as hip-1. hip-1 is T12D8.8. ZK370.3 is hipr-1 | Paper_evidence | WBPaper00005786 | |||||||
| Method | Gene |
