WormBase Tree Display for Gene: WBGene00022499
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WBGene00022499 | SMap | S_parent | Sequence | ZC8 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | set-30 | Person_evidence | WBPerson1730 | |||
WBPerson268 | |||||||
WBPerson632 | |||||||
Sequence_name | ZC8.3 | ||||||
Molecular_name | ZC8.3 | ||||||
ZC8.3.1 | |||||||
CE33744 | |||||||
Other_name | tag-226 | Person_evidence | WBPerson201 | ||||
CELE_ZC8.3 | Accession_evidence | NDB | BX284606 | ||||
Public_name | set-30 | ||||||
DB_info | Database | AceView | gene | XF621 | |||
WormQTL | gene | WBGene00022499 | |||||
WormFlux | gene | WBGene00022499 | |||||
NDB | locus_tag | CELE_ZC8.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00022499|UniProtKB=Q23084 | |||||
family | PTHR12197 | ||||||
NCBI | gene | 180772 | |||||
RefSeq | protein | NM_076449.6 | |||||
TREEFAM | TREEFAM_ID | TF106487 | |||||
TrEMBL | UniProtAcc | Q23084 | |||||
UniProt_GCRP | UniProtAcc | Q23084 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | set | ||||||
Allele (65) | |||||||
Strain | WBStrain00036009 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00077222 | ||||||
00077223 | |||||||
00077224 | |||||||
00077225 | |||||||
Ortholog (31) | |||||||
Paralog | WBGene00009370 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00011068 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00044070 | Caenorhabditis elegans | From_analysis | TreeFam | ||||
WormBase-Compara | |||||||
WBGene00007403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | set-30 encodes a divergent ortholog of human SMYD1 (OMIM:606846), SMYD2 (OMIM:610663), and SYMD3 (OMIM:608783); SET-30 is paralogous to SET-10, SET-14, and SET-18; neither set-30(gk314) nor set-30(RNAi) have any obvious phenotypes. | Paper_evidence | WBPaper00030864 | |||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 08 Oct 2007 00:00:00 | ||||||
Automated_description | Enables histone H3K4 methyltransferase activity. Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | ZC8.3 | |||||
Corresponding_CDS_history | ZC8.3:wp97 | ||||||
Corresponding_transcript | ZC8.3.1 | ||||||
Other_sequence | BMC06420_1 | ||||||
CJC13357_1 | |||||||
JI465669.1 | |||||||
JI464167.1 | |||||||
Associated_feature (6) | |||||||
Experimental_info | RNAi_result | WBRNAi00059019 | Inferred_automatically | RNAi_primary | |||
WBRNAi00091495 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021757 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038103 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00113460 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00059020 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00021758 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr14377 | ||||||
Expr1023927 | |||||||
Expr1039942 | |||||||
Expr1162451 | |||||||
Expr2015775 | |||||||
Expr2034008 | |||||||
Drives_construct | WBCnstr00024201 | ||||||
Construct_product | WBCnstr00024201 | ||||||
Microarray_results (22) | |||||||
Expression_cluster (188) | |||||||
Interaction | WBInteraction000521297 | ||||||
WBInteraction000521430 | |||||||
WBInteraction000521432 | |||||||
WBInteraction000560966 | |||||||
Map_info | Map | X | Position | -6.19835 | Error | 0.000307 | |
Positive | Positive_clone | ZC8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Mapping_data | Multi_point | 4925 | |||||
5406 | |||||||
Pseudo_map_position | |||||||
Reference (12) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |