WormBase Tree Display for Gene: WBGene00021987

WBGene00021987 SMap: S_parent: Sequence: Y59E1A
  Identity: Version: 3
    Name: CGC_name: fbxa-40 Person_evidence: WBPerson655
      Sequence_name: Y59E1A.1
      Molecular_name: Y59E1A.1
        Y59E1A.1.1
        CE39372
      Other_name: Y59E1A.b Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y59E1A.1 Accession_evidence: NDB BX284606
      Public_name: fbxa-40
    DB_info: Database: AceView gene XC554
        WormQTL gene WBGene00021987
        WormFlux gene WBGene00021987
        NDB locus_tag CELE_Y59E1A.1
        Panther gene CAEEL|WormBase=WBGene00021987|UniProtKB=Q968Z2
          family PTHR23015
        NCBI gene 190408
        RefSeq protein NM_001374973.1
        TREEFAM TREEFAM_ID TF322360
        TrEMBL UniProtAcc Q9TXM9
        UniProt_GCRP UniProtAcc Q9TXM9
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-40
        3 25 Jul 2019 15:06:07 WBPerson4025 Event: Split_into: WBGene00304826
      Split_into: WBGene00304826
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: fbxa
    Allele (33)
    RNASeq_FPKM (74)
    Ortholog (18)
    Paralog (222)
    Structured_description: Concise_description: fbxa-40 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-40 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in body wall muscle cell based on tiling array studies. Is affected by several genes including daf-16; sir-2.1; and pgl-1 based on RNA-seq and microarray studies. Is affected by fluoranthene; Chlorpyrifos; and Diazinon based on microarray studies. Is predicted to encode a protein with the following domains: F-box-like domain superfamily; FTH domain; F-box domain; Domain of unknown function DUF38/FTH, Caenorhabditis species; and F-box A protein FB224. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y59E1A.1
    Corresponding_CDS_history: Y59E1A.1:wp88
      Y59E1A.1:wp272
    Corresponding_transcript: Y59E1A.1.1
    Associated_feature: WBsf670130
      WBsf670131
      WBsf1004184
      WBsf1004185
      WBsf1004186
      WBsf1022375
  Experimental_info: RNAi_result: WBRNAi00015400 Inferred_automatically: RNAi_primary
      WBRNAi00021169 Inferred_automatically: RNAi_primary
      WBRNAi00047967 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1161188
    Drives_construct: WBCnstr00024375
    Construct_product: WBCnstr00024375
    Microarray_results (16)
    Expression_cluster (38)
  Map_info: Map: X Position: -17.2861 Error: 0.012831
    Positive: Positive_clone: Y59E1A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene