WormBase Tree Display for Gene: WBGene00021929
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| WBGene00021929 | SMap | S_parent | Sequence | Y55F3AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | dcap-1 | Person_evidence | WBPerson1787 | |||||
| Sequence_name | Y55F3AM.12 | ||||||||
| Molecular_name | Y55F3AM.12 | ||||||||
| Y55F3AM.12.1 | |||||||||
| CE22543 | |||||||||
| Other_name | dcp1 | Paper_evidence | WBPaper00026846 | ||||||
| CELE_Y55F3AM.12 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | dcap-1 | ||||||||
| DB_info | Database | AceView | gene | 4B806 | |||||
| WormQTL | gene | WBGene00021929 | |||||||
| WormFlux | gene | WBGene00021929 | |||||||
| NDB | locus_tag | CELE_Y55F3AM.12 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021929|UniProtKB=Q9N363 | |||||||
| family | PTHR16290 | ||||||||
| NCBI | gene | 176924 | |||||||
| RefSeq | protein | NM_067629.7 | |||||||
| SwissProt | UniProtAcc | Q9N363 | |||||||
| TREEFAM | TREEFAM_ID | TF320504 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N363 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | dcap-1 | ||||
| 3 | 19 Dec 2005 14:45:01 | WBPerson2970 | Name_change | Other_name | dcp1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dcap | ||||||||
| Allele (53) | |||||||||
| Strain | WBStrain00002810 | ||||||||
| WBStrain00036759 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (32) | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | dcap-1 encodes an ortholog of budding yeast Dcp1p and human DCP1A(OMIM:607010) and DCP1B (OMIM:609843); DCAP-1 is expressed in diversetissues, including muscle, intestine, neurons, and the reproductivesystem; DCAP-1 is colocalized with CAR-1 to P granules, and with AIN-1and CAR-1 to discrete cytoplasmic foci that resemble P bodies; althoughit is orthologous to mRNA decapping complex subunits, DCAP-1 itselfshows no decapping activity in vitro on either m7GpppG- orm2,2,7GpppG-capped RNAs; however, dcap-1(RNAi) shows weak syntheticlethality with dcap-2(RNAi), suggesting that DCAP-1 and DCAP-2 arepartially redundant in vivo. | Paper_evidence | WBPaper00006525 | |||||
| WBPaper00024397 | |||||||||
| WBPaper00026707 | |||||||||
| WBPaper00026846 | |||||||||
| WBPaper00026933 | |||||||||
| WBPaper00028410 | |||||||||
| WBPaper00029287 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 02 May 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable mRNA binding activity. Involved in several processes, including determination of adult lifespan; nematode larval development; and response to heat. Located in P granule and P-body. Expressed in head; motor neurons; neurons; tail; and touch receptor neurons. Is an ortholog of human DCP1A (decapping mRNA 1A) and DCP1B (decapping mRNA 1B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y55F3AM.12 | |||||||
| Corresponding_transcript | Y55F3AM.12.1 | ||||||||
| Other_sequence | Acan_isotig08404 | ||||||||
| CRC01295_1 | |||||||||
| CBC07589_1 | |||||||||
| CR01929 | |||||||||
| CR09392 | |||||||||
| Associated_feature | WBsf651635 | ||||||||
| WBsf229736 | |||||||||
| WBsf229737 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082155 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021047 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00021044 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082157 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057523 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00003337 | ||||||||
| WBCnstr00009614 | |||||||||
| WBCnstr00019819 | |||||||||
| WBCnstr00019820 | |||||||||
| WBCnstr00019827 | |||||||||
| WBCnstr00024401 | |||||||||
| Construct_product | WBCnstr00005580 | ||||||||
| WBCnstr00018462 | |||||||||
| WBCnstr00019222 | |||||||||
| WBCnstr00019820 | |||||||||
| WBCnstr00019827 | |||||||||
| WBCnstr00024401 | |||||||||
| Regulate_expr_cluster | WBPaper00065043:dcap-1(tm3163)_downregulated | ||||||||
| WBPaper00065043:dcap-1(tm3163)_upregulated | |||||||||
| Antibody | WBAntibody00000956 | ||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (110) | |||||||||
| Interaction (39) | |||||||||
| Map_info | Map | IV | Position | -22.4137 | Error | 0.043406 | |||
| Positive | Positive_clone | Y55F3AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (16) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
