WormBase Tree Display for Gene: WBGene00021914
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WBGene00021914 | SMap | S_parent | Sequence | Y55B1BR | ||
---|---|---|---|---|---|---|
Identity | Version | 3 | ||||
Name (5) | ||||||
DB_info | Database | AceView | gene | 3B88 | ||
3B80 | ||||||
WormQTL | gene | WBGene00021914 | ||||
WormFlux | gene | WBGene00021914 | ||||
NDB | locus_tag | CELE_Y55B1BR.4 | ||||
Panther | gene | CAEEL|WormBase=WBGene00021914|UniProtKB=Q95XW5 | ||||
family | PTHR23122 | |||||
NCBI | gene | 190302 | ||||
RefSeq | protein | NM_064800.4 | ||||
TrEMBL | UniProtAcc | Q95XW5 | ||||
UniProt_GCRP | UniProtAcc | Q95XW5 | ||||
Species | Caenorhabditis elegans | |||||
History | Version_change (3) | |||||
Status | Live | |||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | magu | |||||
Allele (146) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00089375 | |||||
00089376 | ||||||
00089377 | ||||||
00089378 | ||||||
00089379 | ||||||
00089380 | ||||||
00089381 | ||||||
00089382 | ||||||
00089383 | ||||||
Ortholog (43) | ||||||
Paralog | WBGene00002991 | Caenorhabditis elegans | From_analysis | TreeFam | ||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00006467 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00016841 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | ||||||
WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to be located in cell-cell junction and plasma membrane. Expressed in arcade cell; intestine; and marginal cell. Is an ortholog of human MPP7 (MAGUK p55 scaffold protein 7). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | Y55B1BR.4 | ||||
Corresponding_transcript | Y55B1BR.4.1 | |||||
Other_sequence (27) | ||||||
Associated_feature | WBsf991067 | |||||
WBsf991068 | ||||||
WBsf1014074 | ||||||
Experimental_info | RNAi_result | WBRNAi00037511 | Inferred_automatically | RNAi_primary | ||
WBRNAi00021014 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00057510 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr11293 | |||||
Expr1023721 | ||||||
Expr1039629 | ||||||
Expr1160943 | ||||||
Expr2013352 | ||||||
Expr2031584 | ||||||
Drives_construct | WBCnstr00018743 | |||||
WBCnstr00037821 | ||||||
Construct_product | WBCnstr00037821 | |||||
Microarray_results (22) | ||||||
Expression_cluster (64) | ||||||
Interaction (96) | ||||||
Map_info | Map | III | Position | -26.8441 | ||
Positive | Positive_clone | Y55B1BR | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00032233 | |||||
WBPaper00038491 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Removed tag-117 as an other name as this was causing confusuon as the literature suggests it should be associated with magu-2 and not magu-1. | Curator_confirmed | WBPerson1983 | ||||
Method | Gene |