WormBase Tree Display for Gene: WBGene00021662

WBGene00021662 SMap: S_parent: Sequence: Y48G1BL
  Identity: Version: 4
    Name: CGC_name: snpc-3.3 Person_evidence: WBPerson2290
      Sequence_name: Y48G1BL.1
      Molecular_name: Y48G1BL.1
      Other_name: Y48G1BL.d Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        Y48G1BL.h Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y48G1BL.1 Accession_evidence: NDB BX284601
      Public_name: snpc-3.3
    DB_info: Database: AceView gene 1A691
        WormQTL gene WBGene00021662
        WormFlux gene WBGene00021662
        NDB locus_tag CELE_Y48G1BL.1
        NCBI gene 190031
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Jul 2013 14:01:25 WBPerson2970 Name_change: CGC_name: snpc-3.3
        3 03 Sep 2014 16:12:01 WBPerson1983 Event: Split_into: WBGene00255594
        4 21 Oct 2019 15:29:59 WBPerson4025 Event: Changed_class: CDS Pseudogene
      Split_into: WBGene00255594
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: snpc
    Allele (12)
    RNASeq_FPKM (74)
    Ortholog: WBGene00156583 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00138220 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00055902 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00119461 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00181337 Caenorhabditis japonica From_analysis: TreeFam
    Paralog: WBGene00008933 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
      WBGene00011367 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00015098 Caenorhabditis elegans From_analysis: TreeFam
            Panther
      WBGene00021667 Caenorhabditis elegans From_analysis: TreeFam
            Panther
    Structured_description: Automated_description: Enriched in AVA; AVE; and germ line based on tiling array and RNA-seq studies. Is affected by several genes including daf-16; daf-2; and sir-2.1 based on tiling array; RNA-seq; and microarray studies. Is affected by metformin; Sirolimus; and antimycin based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: Y48G1BL.1:wp245
      Y48G1BL.1:wp274
    Corresponding_pseudogene: Y48G1BL.1
    Associated_feature (11)
  Experimental_info: Expr_pattern: Expr1020074
      Expr1039484
      Expr1160385
      Expr2015961
      Expr2034196
    Drives_construct: WBCnstr00024464
    Construct_product: WBCnstr00024464
    Microarray_results: SMD_Y48G1C_55.C
      SMD_Y48G1C_55.F
      Aff_Y48G1C_55.C
      GPL14144_B0273.3_279-338_0.669_108_C
    Expression_cluster (90)
    Interaction: WBInteraction000571495
      WBInteraction000571503
  Map_info: Map: I Position: -19.1211
    Positive: Positive_clone: Y48G1BL Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene