WormBase Tree Display for Gene: WBGene00021473
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| WBGene00021473 | SMap | S_parent | Sequence | Y39G10AR | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sydn-1 | Person_evidence | WBPerson293 | |||||
| WBPerson105 | |||||||||
| Sequence_name | Y39G10AR.17 | ||||||||
| Molecular_name | Y39G10AR.17 | ||||||||
| Y39G10AR.17.1 | |||||||||
| CE47864 | |||||||||
| Other_name | CELE_Y39G10AR.17 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | sydn-1 | ||||||||
| DB_info | Database | AceView | gene | 1C944 | |||||
| WormQTL | gene | WBGene00021473 | |||||||
| WormFlux | gene | WBGene00021473 | |||||||
| NDB | locus_tag | CELE_Y39G10AR.17 | |||||||
| NCBI | gene | 189773 | |||||||
| RefSeq | protein | NM_001381388.1 | |||||||
| SwissProt | UniProtAcc | Q95XQ1 | |||||||
| UniProt_GCRP | UniProtAcc | Q95XQ1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 Jul 2010 15:11:58 | WBPerson2970 | Name_change | CGC_name | sydn-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sydn | ||||||||
| Allele (123) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089215 | ||||||||
| 00089216 | |||||||||
| 00089217 | |||||||||
| 00089218 | |||||||||
| 00089219 | |||||||||
| Contained_in_operon | CEOP1967 | ||||||||
| Ortholog (11) | |||||||||
| Paralog | WBGene00000872 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00008848 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016735 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00018976 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019030 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00021698 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to be involved in mRNA processing. Located in nuclear speck. Expressed in germ cell; hypodermis; neurons; and oocyte. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39G10AR.17 | |||||||
| Corresponding_CDS_history | Y39G10AR.17:wp124 | ||||||||
| Y39G10AR.17:wp184 | |||||||||
| Corresponding_transcript | Y39G10AR.17.1 | ||||||||
| Other_sequence | MI05803 | ||||||||
| JI255053.1 | |||||||||
| EX555477.1 | |||||||||
| Dviv_isotig35710 | |||||||||
| CBC09597_1 | |||||||||
| Associated_feature | WBsf663947 | ||||||||
| WBsf663948 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056270 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr9065 | ||||||||
| Expr13242 | |||||||||
| Expr1010642 | |||||||||
| Expr1039384 | |||||||||
| Expr1159752 | |||||||||
| Expr2017173 | |||||||||
| Expr2035309 | |||||||||
| Drives_construct | WBCnstr00007000 | ||||||||
| WBCnstr00007004 | |||||||||
| WBCnstr00007005 | |||||||||
| Construct_product | WBCnstr00006915 | ||||||||
| WBCnstr00007000 | |||||||||
| WBCnstr00007001 | |||||||||
| WBCnstr00007003 | |||||||||
| WBCnstr00007004 | |||||||||
| WBCnstr00007005 | |||||||||
| WBCnstr00013697 | |||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (77) | |||||||||
| Interaction | WBInteraction000032442 | ||||||||
| WBInteraction000542459 | |||||||||
| WBInteraction000543552 | |||||||||
| WBInteraction000546263 | |||||||||
| WBInteraction000546350 | |||||||||
| WBInteraction000546526 | |||||||||
| Map_info | Map | I | Position | -8.85059 | Error | 0.032596 | |||
| Positive | Positive_clone | Y39G10AR | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
