WormBase Tree Display for Gene: WBGene00021401
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WBGene00021401 | Evidence | Paper_evidence | WBPaper00006517 | ||||||
---|---|---|---|---|---|---|---|---|---|
SMap | S_parent | Sequence | Y38C1AA | ||||||
Identity | Version | 2 | |||||||
Name | CGC_name | prdx-6 | Paper_evidence | WBPaper00006517 | |||||
Sequence_name | Y38C1AA.11 | ||||||||
Molecular_name | Y38C1AA.11 | ||||||||
Y38C1AA.11.1 | |||||||||
CE31640 | |||||||||
Other_name | ceprx3 | Paper_evidence | WBPaper00006517 | ||||||
Y38C1AA.j | Curator_confirmed | WBPerson1983 | |||||||
Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
CELE_Y38C1AA.11 | Accession_evidence | NDB | BX284604 | ||||||
Public_name | prdx-6 | ||||||||
DB_info | Database | AceView | gene | 4A973 | |||||
WormQTL | gene | WBGene00021401 | |||||||
WormFlux | gene | WBGene00021401 | |||||||
NDB | locus_tag | CELE_Y38C1AA.11 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021401|UniProtKB=Q8MXT1 | |||||||
family | PTHR43503 | ||||||||
NCBI | gene | 176837 | |||||||
RefSeq | protein | NM_171241.5 | |||||||
TREEFAM | TREEFAM_ID | TF105183 | |||||||
TrEMBL | UniProtAcc | Q8MXT1 | |||||||
UniProt_GCRP | UniProtAcc | Q8MXT1 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 14 Jun 2006 08:38:48 | WBPerson2970 | Name_change | CGC_name | prdx-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | prdx | ||||||||
Allele (26) | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00084703 | ||||||||
00084704 | |||||||||
00084705 | |||||||||
00084706 | |||||||||
00084707 | |||||||||
00084708 | |||||||||
00084709 | |||||||||
00125760 | |||||||||
00125761 | |||||||||
00125762 | |||||||||
Contained_in_operon (2) | |||||||||
Ortholog (36) | |||||||||
Paralog | WBGene00006434 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
WBGene00011110 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable peroxiredoxin activity. Predicted to be involved in cell redox homeostasis. Predicted to be located in cytosol and mitochondrion. Is an ortholog of human PRDX6 (peroxiredoxin 6). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info (4) | |||||||||
Experimental_info | Expr_pattern | Expr1013926 | |||||||
Expr1039348 | |||||||||
Expr1159499 | |||||||||
Expr2015089 | |||||||||
Expr2033326 | |||||||||
Antibody | WBAntibody00000737 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (100) | |||||||||
Interaction (84) | |||||||||
Map_info | Map | IV | Position | -26.8083 | Error | 0.006782 | |||
Positive | Positive_clone | Y38C1AA | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00038491 | ||||||||
WBPaper00055090 | |||||||||
WBPaper00064988 | |||||||||
WBPaper00065026 | |||||||||
Remark | prdx-6 was previously incorrectly connected to Y38C1AA.1 (WBGene00021394) | Curator_confirmed | WBPerson2970 | ||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
Method | Gene |