WormBase Tree Display for Gene: WBGene00021391

WBGene00021391 SMap: S_parent: Sequence: Y38A10A
  Identity: Version: 2
    Name: CGC_name: smut-1 Person_evidence: WBPerson545
            WBPerson2733
      Sequence_name: Y38A10A.6
      Molecular_name: Y38A10A.6
        Y38A10A.6.1
        CE28975
      Other_name: CELE_Y38A10A.6 Accession_evidence: NDB BX284605
      Public_name: smut-1
    DB_info: Database: AceView gene 5G579
        WormQTL gene WBGene00021391
        WormFlux gene WBGene00021391
        NDB locus_tag CELE_Y38A10A.6
        NCBI gene 178996
        RefSeq protein NM_072173.8
        TREEFAM TREEFAM_ID TF300364
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Apr 2013 09:53:02 WBPerson2970 Name_change: CGC_name: smut-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smut
    Allele (31)
    In_cluster: conserved_miRNA_siRNA_cluster
    RNASeq_FPKM (74)
    GO_annotation: 00125754
      00125755
    Contained_in_operon: CEOP5104
    Ortholog (28)
    Paralog (35)
    Structured_description: Concise_description: smut-1 encodes a DEAD-box RNA helicase; SMUT-1 activity is required redundantly with its paralog MUT-14, for germline RNAi and endogenous siRNA formation. Paper_evidence: WBPaper00045091
          Curator_confirmed: WBPerson1843
          Date_last_updated: 26 Jun 2014 00:00:00
      Automated_description: Predicted to enable ATP binding activity and nucleic acid binding activity. Expressed in embryonic cell and germ cell. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y38A10A.6
    Corresponding_transcript: Y38A10A.6.1
    Associated_feature: WBsf231835
      WBsf231836
      WBsf231837
  Experimental_info: RNAi_result: WBRNAi00075498 Inferred_automatically: RNAi_primary
      WBRNAi00069250 Inferred_automatically: RNAi_primary
      WBRNAi00055974 Inferred_automatically: RNAi_primary
      WBRNAi00020248 Inferred_automatically: RNAi_primary
      WBRNAi00069251 Inferred_automatically: RNAi_primary
      WBRNAi00069249 Inferred_automatically: RNAi_primary
      WBRNAi00069248 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr11746
      Expr1012311
      Expr1039343
      Expr1159493
      Expr2015931
      Expr2034164
    Drives_construct: WBCnstr00019230
      WBCnstr00019425
      WBCnstr00024561
    Construct_product: WBCnstr00024561
    Microarray_results (19)
    Expression_cluster (91)
    SAGE_tag: SAGE:gattttcacc Strand: Antisense
      SAGE:cttcggaaat Strand: Sense
        Unambiguously_mapped
      SAGE:aatgttgcaa Strand: Antisense
      SAGE:caatagaagatcaccga Strand: Sense
        Unambiguously_mapped
      SAGE:gattttcacctaacatt Strand: Antisense
      SAGE:catagaatcggacgagt Strand: Sense
        Unambiguously_mapped
      SAGE:gaagcatactattgcaa Strand: Sense
        Unambiguously_mapped
      SAGE:catagaatcg Strand: Sense
        Unambiguously_mapped
      SAGE:gagttgtatg Strand: Sense
        Unambiguously_mapped
    Interaction (52)
  Map_info: Map: V Position: -0.354827
    Positive: Positive_clone: Y38A10A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00043862
    WBPaper00045091
    WBPaper00047131
    WBPaper00059651
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene