WormBase Tree Display for Gene: WBGene00021038
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| WBGene00021038 | SMap | S_parent | Sequence | W05F2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | W05F2.6 | |||||||
| Molecular_name | W05F2.6a | ||||||||
| W05F2.6a.1 | |||||||||
| CE42028 | |||||||||
| W05F2.6b | |||||||||
| CE50277 | |||||||||
| W05F2.6b.1 | |||||||||
| Other_name | CELE_W05F2.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | W05F2.6 | ||||||||
| DB_info | Database | AceView | gene | 1D939 | |||||
| WormQTL | gene | WBGene00021038 | |||||||
| WormFlux | gene | WBGene00021038 | |||||||
| NDB | locus_tag | CELE_W05F2.6 | |||||||
| NCBI | gene | 171909 | |||||||
| RefSeq | protein | NM_058750.8 | |||||||
| NM_001313515.3 | |||||||||
| TrEMBL | UniProtAcc | A0A0K3ATQ5 | |||||||
| Q9TYT7 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9TYT7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (59) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Contained_in_operon | CEOP1092 | ||||||||
| Ortholog | WBGene00056428 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | |||||
| WBGene00190149 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00162860 | Caenorhabditis brenneri | From_analysis | Inparanoid_8 | ||||||
| WBGene00039279 | Caenorhabditis briggsae | From_analysis | WormBase-Compara | ||||||
| Cni-ZK484.3 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| chrI_pilon.g500 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00010708 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| WormBase-Compara | |||||||||
| WBGene00022749 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in enteric muscle; germ line; germline precursor cell; head mesodermal cell; and seam cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and hsf-1 based on microarray; RNA-seq; and proteomic studies. Is affected by eleven chemicals including manganese chloride; Alovudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W05F2.6a | |||||||
| W05F2.6b | |||||||||
| Corresponding_CDS_history | W05F2.6:wp186 | ||||||||
| Corresponding_transcript | W05F2.6a.1 | ||||||||
| W05F2.6b.1 | |||||||||
| Other_sequence | Tcir_isotig09620 | ||||||||
| Associated_feature | WBsf217390 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00004437 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036306 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054829 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1013573 | ||||||||
| Expr1039171 | |||||||||
| Expr1158372 | |||||||||
| Expr2006802 | |||||||||
| Expr2025027 | |||||||||
| Drives_construct | WBCnstr00024715 | ||||||||
| Construct_product | WBCnstr00024715 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (122) | |||||||||
| Interaction | WBInteraction000194510 | ||||||||
| WBInteraction000225923 | |||||||||
| WBInteraction000265819 | |||||||||
| WBInteraction000276146 | |||||||||
| WBInteraction000427031 | |||||||||
| WBInteraction000453150 | |||||||||
| WBInteraction000456172 | |||||||||
| WBInteraction000570271 | |||||||||
| Map_info | Positive | Positive_clone | W05F2 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | I | -3.78928 | |||||||
| Method | Gene |
