WormBase Tree Display for Gene: WBGene00020936
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| WBGene00020936 | SMap | S_parent | Sequence | W02D3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | hrpf-1 | Person_evidence | WBPerson713 | |||||
| WBPerson6228 | |||||||||
| Sequence_name | W02D3.11 | ||||||||
| Molecular_name | W02D3.11a | ||||||||
| W02D3.11a.1 | |||||||||
| CE26020 | |||||||||
| W02D3.11b | |||||||||
| CE31078 | |||||||||
| W02D3.11b.1 | |||||||||
| Other_name | W02D3.a | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_W02D3.11 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | hrpf-1 | ||||||||
| DB_info | Database | AceView | gene | 1H330 | |||||
| WormQTL | gene | WBGene00020936 | |||||||
| WormFlux | gene | WBGene00020936 | |||||||
| NDB | locus_tag | CELE_W02D3.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020936|UniProtKB=Q9BIB7 | |||||||
| family | PTHR13976 | ||||||||
| NCBI | gene | 172395 | |||||||
| RefSeq | protein | NM_001372997.1 | |||||||
| NM_170888.7 | |||||||||
| TrEMBL | UniProtAcc | Q9BIB7 | |||||||
| H2KZN0 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9BIB7 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jun 2007 13:19:48 | WBPerson2970 | Name_change | CGC_name | hrpf-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | hrpf | ||||||||
| Allele (27) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00022443 | ||||||||
| 00022444 | |||||||||
| 00022445 | |||||||||
| 00022446 | |||||||||
| 00022447 | |||||||||
| 00022448 | |||||||||
| 00125446 | |||||||||
| 00125447 | |||||||||
| Contained_in_operon | CEOP1348 | ||||||||
| Ortholog (27) | |||||||||
| Paralog | WBGene00006367 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00013703 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022253 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | W02D3.11 encodes, by alternative splicing, two protein isoforms orthologous to human hnRNP F and hnRNP H proteins, which activate alternative mRNA splicing in neurons; W02D3.11A-B proteins localize to nuclear speckles thought to represent foci of pre-mRNA; with EXC-7 and UNC-75, W02D3.11A-B may act as pre-mRNA splicing factors. | Paper_evidence | WBPaper00006029 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable RNA binding activity. Predicted to be involved in regulation of RNA splicing. Predicted to be located in nucleoplasm. Predicted to be part of ribonucleoprotein complex. Expressed widely. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W02D3.11a | |||||||
| W02D3.11b | |||||||||
| Corresponding_transcript | W02D3.11a.1 | ||||||||
| W02D3.11b.1 | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf649255 | ||||||||
| WBsf649256 | |||||||||
| WBsf976748 | |||||||||
| WBsf976749 | |||||||||
| WBsf219631 | |||||||||
| WBsf219632 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00077562 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054585 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00116620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036188 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2671 | ||||||||
| Expr1022369 | |||||||||
| Expr1039122 | |||||||||
| Expr1158129 | |||||||||
| Expr2012601 | |||||||||
| Expr2030837 | |||||||||
| Drives_construct | WBCnstr00010896 | ||||||||
| Construct_product | WBCnstr00010896 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (103) | |||||||||
| Interaction (19) | |||||||||
| Map_info | Map | I | Position | 1.30877 | Error | 0.000917 | |||
| Positive | Positive_clone | W02D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031852 | ||||||||
| WBPaper00032116 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046432 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060270 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00062110 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
