WormBase Tree Display for Gene: WBGene00020160
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| WBGene00020160 | SMap | S_parent | Sequence | T02C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | igcm-3 | Person_evidence | WBPerson1103 | |||||
| Sequence_name | T02C5.3 | ||||||||
| Molecular_name (27) | |||||||||
| Other_name | tag-311 | CGC_data_submission | |||||||
| CELE_T02C5.3 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | igcm-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00020160 | |||||
| WormFlux | gene | WBGene00020160 | |||||||
| NDB | locus_tag | CELE_T02C5.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00020160|UniProtKB=A7LPD6 | |||||||
| family | PTHR11640 | ||||||||
| NCBI | gene | 180569 | |||||||
| RefSeq | protein | NM_001129703.4 | |||||||
| NM_001404194.1 | |||||||||
| NM_001404198.1 | |||||||||
| NM_001404197.1 | |||||||||
| NM_001404199.1 | |||||||||
| NM_001404193.1 | |||||||||
| NM_076078.6 | |||||||||
| NM_001404195.1 | |||||||||
| NM_001404196.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF325554 | |||||||
| TrEMBL | UniProtAcc | A0A8S4QBH2 | |||||||
| Q22096 | |||||||||
| A0A8S4QB36 | |||||||||
| A0A8S4Q9R2 | |||||||||
| A0A8S4QFI2 | |||||||||
| A0A8S4QDC4 | |||||||||
| A0A8S4QC16 | |||||||||
| A0A8S4QC26 | |||||||||
| A7LPD6 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A8S4QC16 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 Jan 2005 16:28:46 | WBPerson2970 | Name_change | CGC_name | igcm-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | igcm | ||||||||
| Allele (149) | |||||||||
| Strain | WBStrain00036133 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00005107 | ||||||||
| 00005108 | |||||||||
| 00005109 | |||||||||
| 00005110 | |||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | igcm-3 encodes protein containing an immunoglobulin-like domain; loss of igcm-3 activity via RNAi results in a moderate increase in fat content, suggesting that igcm-3 may play a role in regulating lipid metabolism. | Paper_evidence | WBPaper00005655 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in adherens junction. Expressed in arcade cell; hypodermis; pharyngeal muscle cell; spermatheca; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T02C5.3a | |||||||
| T02C5.3b | |||||||||
| T02C5.3c | |||||||||
| T02C5.3d | |||||||||
| T02C5.3e | |||||||||
| T02C5.3f | |||||||||
| T02C5.3g | |||||||||
| T02C5.3h | |||||||||
| T02C5.3i | |||||||||
| Corresponding_CDS_history | T02C5.3:wp102 | ||||||||
| T02C5.3:wp176 | |||||||||
| Corresponding_transcript | T02C5.3a.1 | ||||||||
| T02C5.3b.1 | |||||||||
| T02C5.3c.1 | |||||||||
| T02C5.3d.1 | |||||||||
| T02C5.3e.1 | |||||||||
| T02C5.3f.1 | |||||||||
| T02C5.3g.1 | |||||||||
| T02C5.3h.1 | |||||||||
| T02C5.3i.1 | |||||||||
| Other_sequence (17) | |||||||||
| Associated_feature (20) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018018 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00035053 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023564 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052198 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8853 | ||||||||
| Expr1017040 | |||||||||
| Expr1038766 | |||||||||
| Expr1155831 | |||||||||
| Expr2012705 | |||||||||
| Expr2030941 | |||||||||
| Drives_construct | WBCnstr00013563 | ||||||||
| WBCnstr00025332 | |||||||||
| Construct_product | WBCnstr00025332 | ||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (232) | |||||||||
| Interaction (94) | |||||||||
| Map_info | Map | X | Position | -13.8143 | Error | 0.030906 | |||
| Positive | Positive_clone | T02C5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5223 | |||||||
| 4796 | |||||||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
