WormBase Tree Display for Gene: WBGene00020088
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WBGene00020088 | SMap | S_parent | Sequence | R119 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | icpp | |||||
Allele (123) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00036140 | |||||
00036141 | ||||||
00036142 | ||||||
00036143 | ||||||
00036144 | ||||||
00036145 | ||||||
00124795 | ||||||
00124796 | ||||||
Ortholog (36) | ||||||
Paralog | WBGene00019673 | Caenorhabditis elegans | From_analysis | Panther | ||
WormBase-Compara | ||||||
WBGene00000155 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00003129 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00003130 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00009960 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00012075 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00021088 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
WBGene00021555 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Automated_description | Predicted to enable aminopeptidase activity. Predicted to be involved in proteolysis. Predicted to be located in mitochondrion. Human ortholog(s) of this gene implicated in nephronophthisis-like nephropathy 1. Is an ortholog of human XPNPEP3 (X-prolyl aminopeptidase 3). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:0111117 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:28052) | |
Molecular_info | Corresponding_CDS | R119.2a | ||||
R119.2b | ||||||
Corresponding_CDS_history | R119.2:wp102 | |||||
R119.2:wp229 | ||||||
Corresponding_transcript | R119.2a.1 | |||||
R119.2b.1 | ||||||
Other_sequence (43) | ||||||
Associated_feature | WBsf982479 | |||||
WBsf1009075 | ||||||
WBsf218898 | ||||||
WBsf218899 | ||||||
Experimental_info | RNAi_result | WBRNAi00117086 | Inferred_automatically | RNAi_primary | ||
WBRNAi00022540 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00007259 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00004071 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00051750 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00034842 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr1022300 | |||||
Expr1038727 | ||||||
Expr1155415 | ||||||
Expr2005573 | ||||||
Expr2023791 | ||||||
Microarray_results (18) | ||||||
Expression_cluster (60) | ||||||
Interaction (52) | ||||||
Map_info | Map | I | Position | -19.0587 | ||
Positive | Positive_clone | R119 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00027453 | |||||
WBPaper00028327 | ||||||
WBPaper00038491 | ||||||
WBPaper00055090 | ||||||
WBPaper00064339 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |