WormBase Tree Display for Gene: WBGene00019977
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| WBGene00019977 | SMap | S_parent | Sequence | R09B5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | fpn-1.2 | |||||||
| Sequence_name | R09B5.4 | ||||||||
| Molecular_name | R09B5.4 | ||||||||
| R09B5.4.1 | |||||||||
| CE50982 | |||||||||
| Other_name | CELE_R09B5.4 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | fpn-1.2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Feb 2008 14:54:21 | WBPerson2970 | Name_change | CGC_name | fpn-1.2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | fpn | ||||||||
| Allele (50) | |||||||||
| Strain | WBStrain00031605 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00032929 | ||||||||
| 00032930 | |||||||||
| 00032931 | |||||||||
| 00032932 | |||||||||
| 00032933 | |||||||||
| 00032934 | |||||||||
| 00124705 | |||||||||
| 00124706 | |||||||||
| 00124707 | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00021354 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | R09B5.4 is orthologous to the human gene HYPOTHETICAL PROTEIN (SLC11A3; OMIM:604653), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable iron ion transmembrane transporter activity. Predicted to be involved in iron ion transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in hemochromatosis type 4. Is an ortholog of human SLC40A1 (solute carrier family 40 member 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111028 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:10909) | ||||
| Molecular_info | Corresponding_CDS | R09B5.4 | |||||||
| Corresponding_CDS_history | R09B5.4:wp249 | ||||||||
| Corresponding_transcript | R09B5.4.1 | ||||||||
| Other_sequence | Tcol_isotig16390 | ||||||||
| CJC06353_1 | |||||||||
| Oden_isotig25972 | |||||||||
| PPC05097_1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00017630 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00051598 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram703 | ||||||||
| Expr6488 | |||||||||
| Expr1016280 | |||||||||
| Expr1155272 | |||||||||
| Expr2011876 | |||||||||
| Expr2030114 | |||||||||
| Drives_construct | WBCnstr00002414 | ||||||||
| WBCnstr00025454 | |||||||||
| Construct_product | WBCnstr00025454 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (184) | |||||||||
| Interaction | WBInteraction000152493 | ||||||||
| WBInteraction000299564 | |||||||||
| WBInteraction000346419 | |||||||||
| WBInteraction000381492 | |||||||||
| WBInteraction000442325 | |||||||||
| Map_info | Map | V | Position | -18.8994 | Error | 0.002281 | |||
| Positive | Positive_clone | R09B5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
