WormBase Tree Display for Gene: WBGene00019879
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| WBGene00019879 | SMap | S_parent | Sequence | R05D3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | ||||||||
| Name | Sequence_name | R05D3.5 | ||||||||
| Molecular_name | R05D3.5 | |||||||||
| Other_name | CELE_R05D3.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | R05D3.5 | |||||||||
| DB_info | Database | AceView | gene | 3J439 | ||||||
| WormQTL | gene | WBGene00019879 | ||||||||
| WormFlux | gene | WBGene00019879 | ||||||||
| NDB | locus_tag | CELE_R05D3.5 | ||||||||
| NCBI | gene | 176177 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:31:02 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 20 Jan 2020 12:19:22 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Allele (19) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00141638 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| Inparanoid_8 | ||||||||||
| WBGene00135028 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00055914 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00037635 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| Paralog (13) | ||||||||||
| Structured_description | Automated_description | Enriched in germ line and in male based on RNA-seq studies. Is affected by several genes including daf-12; rrf-3; and sir-2.1 based on tiling array; microarray; and RNA-seq studies. Is affected by six chemicals including Tunicamycin; Cry5B; and silicon dioxide nanoparticle based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | R05D3.5:wp223 | ||||||||
| R05D3.5:wp275 | ||||||||||
| Corresponding_pseudogene | R05D3.5 | |||||||||
| Other_sequence | Dviv_isotig22759 | |||||||||
| EW744002.1 | ||||||||||
| TIC00321_1 | ||||||||||
| ACC40300_1 | ||||||||||
| Dviv_isotig27131 | ||||||||||
| Oden_isotig22866 | ||||||||||
| Tcol_isotig12249 | ||||||||||
| AJ616505.1 | ||||||||||
| Tcol_isotig12248 | ||||||||||
| Associated_feature | WBsf993319 | |||||||||
| WBsf993320 | ||||||||||
| WBsf1015407 | ||||||||||
| WBsf1015408 | ||||||||||
| WBsf1015409 | ||||||||||
| WBsf1015410 | ||||||||||
| Experimental_info | Expr_pattern | Expr1013411 | ||||||||
| Expr1154981 | ||||||||||
| Expr2023612 | ||||||||||
| Microarray_results | SMD_R05D3.5 | |||||||||
| 172142_x_at | ||||||||||
| 172146_x_at | ||||||||||
| Expression_cluster (38) | ||||||||||
| Interaction (194) | ||||||||||
| Map_info | Positive | Positive_clone | R05D3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Interpolated_map_position | III | -0.326048 | ||||||||
| Method | Gene |
